Variant report

Variant	rs375524169
Chromosome Location	chr9:16885348-16885349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv613680	chr9:16882888-16887073	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613685	chr9:16884293-16887073	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16883200-16885400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:16883200-16886200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:16883400-16885400	Enhancers	Osteobl	bone
4	chr9:16883400-16886000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:16883600-16885800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:16883600-16886600	Enhancers	Dnd41	blood
7	chr9:16883800-16885400	Enhancers	Fetal Lung	lung
8	chr9:16883800-16885400	Enhancers	Stomach Smooth Muscle	stomach
9	chr9:16883800-16885800	Enhancers	HSMM	muscle
10	chr9:16883800-16885800	Enhancers	NHDF-Ad	bronchial
11	chr9:16883800-16886000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:16883800-16886000	Enhancers	NHLF	lung
13	chr9:16883800-16886200	Enhancers	Primary hematopoietic stem cells	blood
14	chr9:16883800-16886200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:16884000-16886200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:16884200-16885600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:16884400-16885600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:16884400-16886000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:16884600-16885400	Enhancers	Colon Smooth Muscle	Colon
20	chr9:16884800-16885400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:16884800-16885600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr9:16885000-16885400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:16885000-16885400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:16885000-16885400	Enhancers	Primary T cells from cord blood	blood
25	chr9:16885000-16885400	Weak transcription	HSMMtube	muscle
26	chr9:16885000-16885600	Enhancers	Fetal Stomach	stomach
27	chr9:16885000-16885800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr9:16885000-16886000	Enhancers	Fetal Thymus	thymus
29	chr9:16885000-16886400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:16885200-16885400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links