Variant report

Variant	rs3756246
Chromosome Location	chr4:15706790-15706791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15689195..15690724-chr4:15706537..15708519,2	K562	blood:
2	chr4:15697208..15699857-chr4:15706552..15708335,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10005305	0.94[EUR][1000 genomes]
rs11722300	0.93[EUR][1000 genomes]
rs11729955	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs11947383	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17405811	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs35519415	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6815296	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs6848779	0.92[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3345585	chr4:15704254-15707452	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3414958	chr4:15704254-15708452	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15697600-15723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:15704600-15708200	Weak transcription	Fetal Heart	heart
3	chr4:15705000-15708400	Weak transcription	HSMMtube	muscle
4	chr4:15705000-15708600	Weak transcription	Liver	Liver
5	chr4:15705000-15708600	Weak transcription	Fetal Brain Female	brain
6	chr4:15705000-15735200	Weak transcription	Lung	lung
7	chr4:15705200-15708200	Weak transcription	NHDF-Ad	bronchial
8	chr4:15705200-15708400	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:15705200-15708400	Weak transcription	Ovary	ovary
10	chr4:15705200-15716200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:15705200-15716200	Weak transcription	Brain Anterior Caudate	brain
12	chr4:15705200-15720400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:15705200-15720600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:15705200-15731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:15705400-15707200	Weak transcription	Fetal Kidney	kidney
16	chr4:15705400-15707600	Weak transcription	Adipose Nuclei	Adipose
17	chr4:15705400-15708800	Weak transcription	Brain Angular Gyrus	brain
18	chr4:15705400-15708800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:15705400-15709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:15705400-15709600	Weak transcription	Fetal Intestine Small	intestine
21	chr4:15705400-15713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:15705400-15715800	Weak transcription	Fetal Lung	lung
23	chr4:15705400-15715800	Weak transcription	Fetal Stomach	stomach
24	chr4:15705400-15715800	Weak transcription	NH-A	brain
25	chr4:15705400-15716200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:15705400-15716200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:15705400-15716200	Weak transcription	A549	lung
28	chr4:15705400-15718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:15705400-15727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:15705600-15707800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:15705600-15708400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:15705600-15714000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:15705800-15708000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:15705800-15715600	Weak transcription	Osteobl	bone
35	chr4:15705800-15716200	Weak transcription	Fetal Intestine Large	intestine
36	chr4:15705800-15719400	Weak transcription	Spleen	Spleen
37	chr4:15706000-15727800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:15706200-15706800	Weak transcription	Primary B cells from cord blood	blood
39	chr4:15706200-15706800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
40	chr4:15706400-15707400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
41	chr4:15706600-15706800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr4:15706600-15706800	Enhancers	Brain Substantia Nigra	brain
43	chr4:15706600-15709000	Enhancers	HepG2	liver
44	chr4:15706600-15709200	Genic enhancers	Primary monocytes fromperipheralblood	blood

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