Variant report

Variant	rs375666014
Chromosome Location	chr9:99558008-99558009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831660	chr9:99485058-99672080	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv6624	chr9:99548787-99593968	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1824059	chr9:99557743-99589296	Strong transcription Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99552000-99560400	ZNF genes & repeats	Liver	Liver
2	chr9:99552200-99559200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:99552200-99559400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:99555200-99559200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:99555200-99559200	ZNF genes & repeats	Colon Smooth Muscle	Colon
6	chr9:99555200-99559400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:99555200-99559400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr9:99555200-99560400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr9:99555400-99559400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr9:99555600-99559200	ZNF genes & repeats	Fetal Lung	lung
11	chr9:99555600-99559400	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr9:99555600-99559400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
13	chr9:99556000-99559400	ZNF genes & repeats	Fetal Brain Female	brain
14	chr9:99556400-99559000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr9:99556400-99559200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:99556400-99559200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:99556400-99559400	ZNF genes & repeats	HSMM	muscle
18	chr9:99556600-99558800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr9:99556600-99559000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:99556600-99559200	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr9:99556600-99559200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr9:99556600-99559200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr9:99556600-99559200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:99556600-99559200	ZNF genes & repeats	Brain Hippocampus Middle	brain
25	chr9:99556600-99559200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr9:99556600-99559400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
27	chr9:99556600-99559400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
28	chr9:99556600-99559400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr9:99556800-99558400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
30	chr9:99556800-99558600	ZNF genes & repeats	HSMMtube	muscle
31	chr9:99556800-99559000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
32	chr9:99556800-99559000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:99556800-99559000	ZNF genes & repeats	Small Intestine	intestine
34	chr9:99556800-99559200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr9:99556800-99559200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr9:99556800-99559200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr9:99556800-99559200	ZNF genes & repeats	Aorta	Aorta
38	chr9:99556800-99559200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
39	chr9:99556800-99559200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
40	chr9:99556800-99559200	ZNF genes & repeats	Fetal Muscle Leg	muscle
41	chr9:99556800-99559200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr9:99556800-99559400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr9:99556800-99559400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:99556800-99559400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:99556800-99559400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:99556800-99559400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:99556800-99559400	ZNF genes & repeats	Brain Germinal Matrix	brain
48	chr9:99556800-99559400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:99556800-99559800	ZNF genes & repeats	Fetal Intestine Large	intestine
50	chr9:99557000-99558400	Strong transcription	Brain Angular Gyrus	brain

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