Variant report

Variant	rs375673804
Chromosome Location	chr15:50428839-50428840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50428036..50430534-chr15:50437642..50439457,2	MCF-7	breast:
2	chr15:50420970..50423759-chr15:50428011..50430538,2	MCF-7	breast:
3	chr15:50418543..50420300-chr15:50426585..50429061,2	MCF-7	breast:
4	chr15:50168979..50170922-chr15:50428589..50430451,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50424200-50429000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr15:50425200-50429000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:50425800-50430800	Enhancers	NHDF-Ad	bronchial
4	chr15:50426000-50429000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:50426000-50429400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:50426000-50430600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:50426000-50430800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:50426400-50430400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:50426400-50430400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:50426400-50430600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:50426400-50430600	Enhancers	NHLF	lung
12	chr15:50426400-50430800	Enhancers	Osteobl	bone
13	chr15:50426600-50429000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:50426800-50429000	Enhancers	Stomach Smooth Muscle	stomach
15	chr15:50427200-50429800	Weak transcription	HUVEC	blood vessel
16	chr15:50427600-50429200	Enhancers	Fetal Stomach	stomach
17	chr15:50427600-50429400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:50427800-50429400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:50427800-50429800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:50427800-50429800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:50427800-50429800	Weak transcription	HSMM	muscle
22	chr15:50427800-50429800	Weak transcription	NH-A	brain
23	chr15:50427800-50436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:50428000-50429000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:50428000-50429200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr15:50428000-50429200	Weak transcription	HMEC	breast
27	chr15:50428000-50429200	Weak transcription	K562	blood
28	chr15:50428000-50429200	Weak transcription	NHEK	skin
29	chr15:50428400-50429400	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:50428400-50430400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:50428600-50429600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:50428600-50429800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:50428800-50429000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:50428800-50429800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:50428800-50430200	Flanking Active TSS	A549	lung
36	chr15:50428800-50430200	Flanking Active TSS	Hela-S3	cervix
37	chr15:50428800-50430600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:50428800-50432400	Weak transcription	Primary hematopoietic stem cells	blood

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