Variant report

Variant	rs375808938
Chromosome Location	chr11:77441447-77441448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77435507..77439532-chr11:77440099..77442814,3	K562	blood:
2	chr11:77440760..77442573-chr11:77444032..77446751,2	K562	blood:

Variant related genes	Relation type
ENSG00000227376	Chromatin interaction
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv975951	chr11:77440719-77446428	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77391600-77442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:77394600-77441800	Weak transcription	Spleen	Spleen
3	chr11:77394600-77445600	Weak transcription	Esophagus	oesophagus
4	chr11:77394600-77458800	Weak transcription	Small Intestine	intestine
5	chr11:77394800-77462600	Weak transcription	Fetal Heart	heart
6	chr11:77403200-77442200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:77404600-77441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:77407200-77448000	Weak transcription	K562	blood
9	chr11:77409400-77441600	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:77409600-77441800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:77409600-77453400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:77409600-77458800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:77409600-77478200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:77409800-77441600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:77409800-77441600	Weak transcription	Aorta	Aorta
16	chr11:77409800-77441800	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:77410400-77477600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:77412800-77441800	Weak transcription	Fetal Brain Male	brain
19	chr11:77416800-77441600	Weak transcription	HMEC	breast
20	chr11:77416800-77441800	Weak transcription	NHEK	skin
21	chr11:77417200-77442000	Weak transcription	HUVEC	blood vessel
22	chr11:77417800-77441600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:77418400-77441600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:77422200-77441600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:77424400-77442000	Weak transcription	Right Ventricle	heart
26	chr11:77428600-77442000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:77431600-77482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:77433800-77441800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:77434800-77442200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:77436000-77441600	Weak transcription	Fetal Intestine Small	intestine
31	chr11:77436000-77441800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:77436000-77441800	Weak transcription	Brain Germinal Matrix	brain
33	chr11:77436000-77441800	Weak transcription	Fetal Lung	lung
34	chr11:77436000-77441800	Weak transcription	Psoas Muscle	Psoas
35	chr11:77436000-77442200	Weak transcription	Fetal Stomach	stomach
36	chr11:77436000-77442600	Weak transcription	Pancreas	Pancrea
37	chr11:77436200-77441600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:77436200-77441600	Weak transcription	Primary B cells from cord blood	blood
39	chr11:77436200-77441600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:77436200-77441600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:77436200-77441600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:77436200-77441600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:77436200-77441600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:77436200-77441600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:77436200-77441600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:77436200-77441800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:77436200-77441800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:77436200-77441800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:77436200-77441800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:77436200-77441800	Weak transcription	Adipose Nuclei	Adipose

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