Variant report

Variant	rs375858930
Chromosome Location	chr11:113345661-113345662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv523683	chr11:113341391-113346955	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3404066	chr11:113344767-113347615	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113344600-113345800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
2	chr11:113344800-113345800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
3	chr11:113344800-113345800	Flanking Active TSS	HMEC	breast
4	chr11:113344800-113346000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:113344800-113346600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr11:113344800-113346600	Enhancers	Pancreas	Pancrea
7	chr11:113344800-113346800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr11:113344800-113346800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:113345000-113345800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:113345000-113345800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr11:113345000-113345800	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr11:113345000-113346000	Bivalent Enhancer	Adipose Nuclei	Adipose
13	chr11:113345000-113346000	Bivalent Enhancer	Lung	lung
14	chr11:113345000-113346200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:113345000-113346400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr11:113345000-113346400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr11:113345000-113346400	Enhancers	Gastric	stomach
18	chr11:113345000-113346600	Bivalent Enhancer	Placenta	Placenta
19	chr11:113345000-113346600	Bivalent Enhancer	Spleen	Spleen
20	chr11:113345000-113346800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr11:113345200-113345800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:113345200-113345800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:113345200-113345800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr11:113345200-113345800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
25	chr11:113345200-113345800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr11:113345200-113345800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:113345200-113345800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:113345200-113345800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:113345200-113345800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
30	chr11:113345200-113345800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:113345200-113345800	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr11:113345200-113345800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
33	chr11:113345200-113345800	Bivalent/Poised TSS	NH-A	brain
34	chr11:113345200-113346000	Active TSS	Brain Substantia Nigra	brain
35	chr11:113345200-113346200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
36	chr11:113345200-113346200	Active TSS	HSMM	muscle
37	chr11:113345200-113346400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:113345200-113346400	Active TSS	H9 Cell Line	embryonic stem cell
39	chr11:113345200-113346400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:113345200-113346400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr11:113345200-113346400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:113345200-113346600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:113345200-113347000	Active TSS	Brain Anterior Caudate	brain
44	chr11:113345400-113345800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:113345400-113345800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:113345400-113345800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:113345400-113345800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:113345400-113345800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
49	chr11:113345400-113345800	Active TSS	Right Ventricle	heart
50	chr11:113345400-113345800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon

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