Variant report

Variant	rs3758873
Chromosome Location	chr11:36587017-36587018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10836576	0.95[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11033693	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033695	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3758873	EIF3M	cis	cerebellum	SCAN
rs3758873	RAG1	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36585600-36587800	Enhancers	Dnd41	blood
2	chr11:36586400-36587200	Enhancers	Spleen	Spleen
3	chr11:36586400-36587400	Flanking Active TSS	Thymus	Thymus
4	chr11:36586400-36595200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:36586600-36587200	Enhancers	Colonic Mucosa	Colon
6	chr11:36586600-36587200	Enhancers	Colon Smooth Muscle	Colon
7	chr11:36586600-36587200	Enhancers	Fetal Kidney	kidney
8	chr11:36586600-36587800	Enhancers	Fetal Thymus	thymus
9	chr11:36586600-36595000	Weak transcription	Left Ventricle	heart
10	chr11:36586600-36595200	Weak transcription	Right Ventricle	heart
11	chr11:36586800-36587200	Active TSS	Primary hematopoietic stem cells	blood
12	chr11:36586800-36587200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:36586800-36587200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:36586800-36599400	Weak transcription	Liver	Liver
15	chr11:36586800-36600200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:36587000-36587200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36587000-36589400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:36587000-36590800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:36587000-36595000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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