Variant report

Variant	rs375888561
Chromosome Location	chr12:41852827-41852828
allele	-/GATTTGTAGACTAGTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3501985	chr12:41847710-41863530	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3501996	chr12:41847724-41863526	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2012474	chr12:41852613-41853052	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	nsv52939	chr12:41852797-41852827	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv994429	chr12:41852813-41852843	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv1420235	chr12:41852827-41852858	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41829600-41860600	Weak transcription	Aorta	Aorta
2	chr12:41848600-41860800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:41852200-41853400	Enhancers	Brain Germinal Matrix	brain
4	chr12:41852200-41854000	Enhancers	Fetal Brain Female	brain
5	chr12:41852400-41853400	Enhancers	Colon Smooth Muscle	Colon
6	chr12:41852400-41853800	Enhancers	Fetal Lung	lung
7	chr12:41852400-41854000	Enhancers	Fetal Brain Male	brain
8	chr12:41852600-41854800	Enhancers	Brain Angular Gyrus	brain
9	chr12:41852600-41855000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr12:41852800-41853800	Enhancers	Brain Substantia Nigra	brain
11	chr12:41852800-41855000	Enhancers	Brain Anterior Caudate	brain
12	chr12:41852800-41857800	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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