Variant report
| Variant | rs3759148 |
|---|---|
| Chromosome Location | chr12:49259958-49259959 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:49255800-49260200 | Active TSS | Brain Angular Gyrus | brain |
| 2 | chr12:49256000-49260200 | Active TSS | Brain Inferior Temporal Lobe | brain |
| 3 | chr12:49256400-49260200 | Flanking Active TSS | Cortex derived primary cultured neurospheres | brain |
| 4 | chr12:49256600-49260000 | Active TSS | Brain Anterior Caudate | brain |
| 5 | chr12:49257800-49260000 | Active TSS | HUES64 Cell Line | embryonic stem cell |
| 6 | chr12:49258000-49260200 | Active TSS | Brain Substantia Nigra | brain |
| 7 | chr12:49258200-49260000 | Active TSS | iPS-15b Cell Line | embryonic stem cell |
| 8 | chr12:49258400-49260200 | Active TSS | Fetal Kidney | kidney |
| 9 | chr12:49258600-49260000 | Enhancers | Spleen | Spleen |
| 10 | chr12:49258800-49260200 | Active TSS | H9 Cell Line | embryonic stem cell |
| 11 | chr12:49258800-49260200 | Flanking Active TSS | Primary hematopoietic stem cells | blood |
| 12 | chr12:49258800-49260200 | Active TSS | Brain Dorsolateral Prefrontal Cortex | brain |
| 13 | chr12:49258800-49260200 | Active TSS | Pancreatic Islets | Pancreatic Islet |
| 14 | chr12:49259000-49260000 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
| 15 | chr12:49259000-49260000 | Flanking Active TSS | Primary hematopoietic stem cells short term culture | blood |
| 16 | chr12:49259000-49260000 | Active TSS | Psoas Muscle | Psoas |
| 17 | chr12:49259000-49260000 | Active TSS | GM12878-XiMat | blood |
| 18 | chr12:49259000-49260000 | Flanking Active TSS | HMEC | breast |
| 19 | chr12:49259000-49260200 | Flanking Active TSS | Primary T helper cells fromperipheralblood | blood |
| 20 | chr12:49259000-49260200 | Flanking Active TSS | Primary Natural Killer cells fromperipheralblood | blood |
| 21 | chr12:49259000-49260200 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 22 | chr12:49259000-49260200 | Flanking Active TSS | Colonic Mucosa | Colon |
| 23 | chr12:49259000-49260200 | Flanking Bivalent TSS/Enh | Fetal Thymus | thymus |
| 24 | chr12:49259000-49260200 | Flanking Bivalent TSS/Enh | Thymus | Thymus |
| 25 | chr12:49259200-49260000 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
| 26 | chr12:49259200-49260000 | Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 27 | chr12:49259200-49260000 | Active TSS | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 28 | chr12:49259200-49260000 | Active TSS | Aorta | Aorta |
| 29 | chr12:49259200-49260000 | Active TSS | HepG2 | liver |
| 30 | chr12:49259200-49260000 | Bivalent/Poised TSS | HSMMtube | muscle |
| 31 | chr12:49259200-49260000 | Flanking Active TSS | HUVEC | blood vessel |
| 32 | chr12:49259200-49260200 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
| 33 | chr12:49259200-49260200 | Flanking Active TSS | Primary T cells fromperipheralblood | blood |
| 34 | chr12:49259400-49260000 | Active TSS | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 35 | chr12:49259400-49260000 | Active TSS | Primary T cells from cord blood | blood |
| 36 | chr12:49259400-49260000 | Active TSS | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 37 | chr12:49259400-49260000 | Active TSS | Brain Hippocampus Middle | brain |
| 38 | chr12:49259400-49260000 | Active TSS | Duodenum Smooth Muscle | Duodenum |
| 39 | chr12:49259400-49260000 | Active TSS | Fetal Intestine Large | intestine |
| 40 | chr12:49259400-49260000 | Active TSS | Left Ventricle | heart |
| 41 | chr12:49259400-49260000 | Active TSS | Right Ventricle | heart |
| 42 | chr12:49259400-49260000 | Active TSS | HSMM | muscle |
| 43 | chr12:49259400-49260200 | Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 44 | chr12:49259400-49260200 | Active TSS | Primary T regulatory cells fromperipheralblood | blood |
| 45 | chr12:49259400-49260200 | Active TSS | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 46 | chr12:49259400-49260200 | Active TSS | Brain Germinal Matrix | brain |
| 47 | chr12:49259400-49260200 | Active TSS | Colon Smooth Muscle | Colon |
| 48 | chr12:49259600-49260000 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 49 | chr12:49259600-49260000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 50 | chr12:49259600-49260000 | Bivalent Enhancer | Primary neutrophils fromperipheralblood | blood |
