Variant report

Variant	rs3759175
Chromosome Location	chr12:51675208-51675209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51475694..51478685-chr12:51673331..51675539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110925	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4468392	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56833431	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482304	chr12:51653496-51814917	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51664600-51683200	Weak transcription	Spleen	Spleen
2	chr12:51664600-51692800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:51664800-51685800	Weak transcription	Esophagus	oesophagus
4	chr12:51665400-51679800	Weak transcription	Liver	Liver
5	chr12:51665600-51678200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:51669400-51678200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:51673000-51676000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:51673200-51685200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:51673400-51684800	Weak transcription	GM12878-XiMat	blood
10	chr12:51673800-51679400	Strong transcription	Thymus	Thymus
11	chr12:51673800-51685400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:51673800-51697600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr12:51674000-51675800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:51674000-51680600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr12:51674000-51683400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr12:51674000-51698400	Strong transcription	Fetal Thymus	thymus
17	chr12:51674000-51701400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr12:51674200-51685400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr12:51674200-51685600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr12:51674200-51704000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:51674400-51675800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:51674400-51676000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:51674400-51676200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr12:51674400-51679000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr12:51674400-51685200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr12:51674400-51698400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:51674400-51698600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:51674400-51698800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:51674400-51700600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr12:51674600-51675600	Enhancers	A549	lung
31	chr12:51674600-51675800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr12:51674600-51675800	Enhancers	Hela-S3	cervix
33	chr12:51674600-51675800	Enhancers	HMEC	breast
34	chr12:51674600-51685800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:51674600-51686000	Strong transcription	Primary T cells from cord blood	blood
36	chr12:51674800-51675800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr12:51674800-51675800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr12:51674800-51675800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
39	chr12:51674800-51680000	Strong transcription	Primary B cells from cord blood	blood
40	chr12:51675000-51675400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:51675000-51675400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:51675000-51675400	Flanking Active TSS	NHEK	skin
43	chr12:51675000-51675600	Enhancers	HSMMtube	muscle
44	chr12:51675000-51675800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr12:51675000-51675800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr12:51675000-51675800	Enhancers	HSMM	muscle
47	chr12:51675000-51675800	Enhancers	NHDF-Ad	bronchial
48	chr12:51675000-51676000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr12:51675000-51676000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:51675000-51676800	Enhancers	Placenta	Placenta

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