Variant report

Variant	rs375930847
Chromosome Location	chr6:144719774-144719775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STX11-5	chr6:144719095-144719888	NONHSAT115382

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv516523	chr6:144719765-144728332	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv527525	chr6:144719765-144737670	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144697200-144732600	Weak transcription	Gastric	stomach
2	chr6:144702800-144720600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:144705800-144722600	Weak transcription	Psoas Muscle	Psoas
4	chr6:144711800-144728000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:144712000-144726400	Weak transcription	HSMMtube	muscle
6	chr6:144712400-144720800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:144712400-144722800	Weak transcription	Right Ventricle	heart
8	chr6:144712600-144732600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:144714400-144720800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:144715200-144720600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:144715200-144722800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:144716800-144721600	Weak transcription	NHLF	lung
13	chr6:144716800-144726400	Weak transcription	HUVEC	blood vessel
14	chr6:144716800-144729200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:144717000-144726800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:144717400-144720000	ZNF genes & repeats	GM12878-XiMat	blood
17	chr6:144717400-144729400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:144717800-144719800	ZNF genes & repeats	HepG2	liver
19	chr6:144718200-144720000	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr6:144718400-144719800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr6:144718400-144720000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:144718400-144720200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:144718600-144719800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:144718600-144720000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr6:144718600-144720000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr6:144718600-144720200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:144718800-144719800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:144718800-144719800	ZNF genes & repeats	Dnd41	blood
29	chr6:144718800-144720000	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr6:144719000-144719800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:144719000-144719800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:144719000-144719800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
33	chr6:144719000-144719800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr6:144719200-144719800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
35	chr6:144719200-144736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:144719400-144721000	Weak transcription	Fetal Kidney	kidney
37	chr6:144719400-144722800	Weak transcription	Ovary	ovary
38	chr6:144719400-144722800	Weak transcription	Pancreas	Pancrea
39	chr6:144719400-144724400	Weak transcription	Aorta	Aorta
40	chr6:144719400-144726200	Weak transcription	Fetal Lung	lung
41	chr6:144719400-144727600	Weak transcription	Esophagus	oesophagus
42	chr6:144719400-144728200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:144719400-144730600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:144719400-144732400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:144719400-144737000	Weak transcription	Spleen	Spleen
46	chr6:144719600-144719800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:144719600-144719800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:144719600-144719800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:144719600-144720000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:144719600-144720200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links