Variant report

Variant	rs375949004
Chromosome Location	chr11:77601137-77601138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv555453	chr11:77577494-77618441	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv975954	chr11:77600915-77617903	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77577400-77630800	Weak transcription	Fetal Heart	heart
2	chr11:77578800-77601400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:77579200-77625000	Weak transcription	HMEC	breast
4	chr11:77583400-77670600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:77583400-77690000	Weak transcription	Colonic Mucosa	Colon
6	chr11:77586600-77625000	Weak transcription	Stomach Mucosa	stomach
7	chr11:77587200-77617600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:77587800-77603800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:77588200-77614000	Weak transcription	Right Ventricle	heart
10	chr11:77591200-77605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:77591800-77650400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:77592400-77602400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:77592800-77605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:77592800-77690000	Weak transcription	Small Intestine	intestine
15	chr11:77593800-77625000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:77594000-77602000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:77595400-77620000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:77595800-77671000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:77597400-77617400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:77597400-77625000	Weak transcription	A549	lung
21	chr11:77597600-77601600	Weak transcription	Fetal Brain Female	brain
22	chr11:77597600-77603000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:77597600-77617400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:77597600-77629400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:77597800-77601200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:77597800-77601200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:77597800-77601200	Weak transcription	Hela-S3	cervix
28	chr11:77597800-77601200	Weak transcription	HepG2	liver
29	chr11:77597800-77601400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:77597800-77601400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:77597800-77601600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:77597800-77601600	Weak transcription	Fetal Stomach	stomach
33	chr11:77597800-77602000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:77597800-77602000	Weak transcription	Fetal Intestine Small	intestine
35	chr11:77597800-77602200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:77597800-77602200	Weak transcription	Brain Substantia Nigra	brain
37	chr11:77597800-77602200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:77597800-77602400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:77597800-77602400	Weak transcription	NH-A	brain
40	chr11:77597800-77603800	Weak transcription	NHLF	lung
41	chr11:77597800-77604000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:77597800-77605600	Weak transcription	Fetal Lung	lung
43	chr11:77597800-77609600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:77597800-77612200	Weak transcription	Brain Anterior Caudate	brain
45	chr11:77597800-77613600	Weak transcription	Fetal Intestine Large	intestine
46	chr11:77597800-77614000	Weak transcription	Lung	lung
47	chr11:77597800-77614000	Weak transcription	HSMMtube	muscle
48	chr11:77597800-77614200	Weak transcription	Brain Angular Gyrus	brain
49	chr11:77597800-77614200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:77597800-77614400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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