Variant report

Variant	rs375953165
Chromosome Location	chr16:34213740-34213741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr16:34213600-34213750	GM12866	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:34213700-34213750	MCF10A-Er-Src	breast:	n/a
2	chr16:34213700-34213750	GM12878	blood:	n/a
3	chr16:34213700-34213750	GM06990	blood:	n/a
4	chr16:34213700-34213750	SK-N-SH	brain:	n/a
5	chr16:34213700-34213750	NHDF-neo	bronchial:	n/a
6	chr16:34213700-34213750	HL-60	blood:	n/a
7	chr16:34213700-34213750	AG09309	skin:	n/a
8	chr16:34213700-34213750	GM19239	blood:	n/a
9	chr16:34213700-34213750	NT2-D1	testis:	n/a
10	chr16:34213700-34213750	NH-A	brain:	n/a
11	chr16:34213700-34213750	HCT-116	colon:	n/a
12	chr16:34213700-34213750	HRCEpiC	kidney:	n/a
13	chr16:34213700-34213750	Jurkat	blood:	n/a
14	chr16:34213700-34213750	BJ	skin:	n/a
15	chr16:34213700-34213750	HEEpiC	esophagus:	n/a
16	chr16:34213700-34213750	HEK293	kidney:	embryo
17	chr16:34213700-34213750	HCM	heart:	n/a
18	chr16:34213700-34213750	A549	lung:	n/a
19	chr16:34213700-34213750	SAEC	small airway:	n/a
20	chr16:34213700-34213750	LNCaP	prostate:	n/a
21	chr16:34213700-34213750	HRPEpiC	eye:	n/a
22	chr16:34213700-34213750	AG04450	lung:	fetal
23	chr16:34213700-34213750	AG09319	gingival:	n/a
24	chr16:34213700-34213750	GM12892	blood:	n/a
25	chr16:34213700-34213750	Caco-2	colon:	n/a
26	chr16:34213700-34213750	SK-N-MC	brain:	n/a
27	chr16:34213700-34213750	U87	brain:	n/a
28	chr16:34213700-34213750	CMK	blood:	n/a
29	chr16:34213700-34213750	ECC-1	luminal epithelium:	n/a
30	chr16:34213700-34213750	HCF	heart:	n/a
31	chr16:34213700-34213750	GM12891	blood:	n/a
32	chr16:34213700-34213750	MCF-7	breast:	n/a
33	chr16:34213700-34213750	HIPEpiC	eye:	n/a
34	chr16:34213700-34213750	HMEC	breast:	n/a
35	chr16:34213700-34213750	IMR90	lung:	fetal
36	chr16:34213700-34213750	AG04449	skin:	fetal
37	chr16:34213700-34213750	AG10803	skin:	n/a
38	chr16:34213700-34213750	Hepatocyte	liver:	n/a
39	chr16:34213700-34213750	ProgFib	skin:	n/a
40	chr16:34213700-34213750	T-47D	breast:	n/a
41	chr16:34213700-34213750	H1-hESC	embryonic stem cell:	embryo
42	chr16:34213700-34213750	NHBE	bronchial:	n/a
43	chr16:34213700-34213750	PFSK-1	brain:	n/a
44	chr16:34213700-34213750	HPAEpiC	pulmonary alveolar:	n/a
45	chr16:34213700-34213750	RPTEC	kidney:	n/a
46	chr16:34213700-34213750	BE2_C	brain:	n/a
47	chr16:34213700-34213750	K562	blood:	n/a
48	chr16:34213700-34213750	SK-N-SH_RA	brain:	n/a
49	chr16:34213700-34213750	HUVEC	blood vessel:	n/a
50	chr16:34213700-34213750	ovcar-3	ovarian:	n/a

No data

Variant related genes	Relation type
ENSG00000261331	TF binding region
ENSG00000261331	CpG island

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32538	chr16:33935506-34459464	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
3	nsv542904	chr16:33942289-34427860	ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	esv3336957	chr16:33946491-34387916	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv906654	chr16:34176875-34320353	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv906655	chr16:34176875-34597156	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1061110	chr16:34197339-34304555	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1066136	chr16:34197339-34434323	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1064842	chr16:34197339-34472275	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv1063819	chr16:34197339-34492332	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv1056658	chr16:34197339-34682514	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
12	nsv917674	chr16:34201887-34682588	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
14	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
15	nsv960352	chr16:34213615-34254796	Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:34212800-34214400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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