Variant report

Variant	rs375956554
Chromosome Location	chr5:107615128-107615129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882685	chr5:107564746-107695558	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv4950	chr5:107587778-107637348	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv882687	chr5:107595383-107695558	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv882688	chr5:107595383-107715746	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107575400-107617600	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107577000-107616000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107585000-107617800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:107596600-107616000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:107602200-107615800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107604800-107644400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:107607400-107617600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:107611600-107617800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:107612400-107624600	Weak transcription	Aorta	Aorta
10	chr5:107613400-107616400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:107613800-107616000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr5:107614000-107617200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:107614200-107615800	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:107614400-107615200	Enhancers	Lung	lung
15	chr5:107614400-107615200	Enhancers	Pancreas	Pancrea
16	chr5:107614600-107615200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:107614600-107615200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:107614600-107627000	Weak transcription	Fetal Heart	heart
19	chr5:107614800-107616000	Weak transcription	Adipose Nuclei	Adipose
20	chr5:107615000-107615400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:107615000-107615800	Weak transcription	Liver	Liver
22	chr5:107615000-107617800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:107615000-107619200	Weak transcription	Psoas Muscle	Psoas
24	chr5:107615000-107705600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links