Variant report

Variant	rs375958754
Chromosome Location	chr15:78467090-78467091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78455141..78458694-chr15:78463989..78467554,5	MCF-7	breast:
2	chr15:78421965..78424193-chr15:78465887..78467751,2	K562	blood:
3	chr15:78441557..78443629-chr15:78465322..78467706,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166411	Chromatin interaction
ENSG00000136425	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78447000-78475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78449000-78467800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:78451200-78467600	Strong transcription	Brain Cingulate Gyrus	brain
4	chr15:78451400-78467200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:78452200-78467400	Strong transcription	Brain Angular Gyrus	brain
6	chr15:78452200-78467400	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr15:78453600-78467400	Strong transcription	Fetal Brain Female	brain
8	chr15:78454600-78467400	Strong transcription	Brain Substantia Nigra	brain
9	chr15:78457000-78468400	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:78458800-78468800	Weak transcription	Stomach Mucosa	stomach
11	chr15:78459000-78470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:78460200-78474200	Weak transcription	HepG2	liver
13	chr15:78461800-78471000	Weak transcription	Psoas Muscle	Psoas
14	chr15:78462000-78467200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:78462000-78468000	Strong transcription	Gastric	stomach
16	chr15:78463000-78468200	Enhancers	Primary B cells from peripheral blood	blood
17	chr15:78463400-78467600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:78464200-78467200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:78464600-78467200	Strong transcription	Fetal Stomach	stomach
20	chr15:78464600-78467400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:78464600-78468000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:78464600-78469800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:78464800-78467800	Weak transcription	Colonic Mucosa	Colon
24	chr15:78464800-78468400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:78464800-78468800	Enhancers	Primary hematopoietic stem cells	blood
26	chr15:78464800-78470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:78464800-78475000	Weak transcription	HMEC	breast
28	chr15:78465000-78467200	Weak transcription	Fetal Heart	heart
29	chr15:78465000-78467400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:78465000-78468800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:78465000-78469800	Weak transcription	Hela-S3	cervix
32	chr15:78465000-78470000	Weak transcription	HSMM	muscle
33	chr15:78465200-78467200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:78465200-78467600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:78465200-78467600	Weak transcription	Brain Germinal Matrix	brain
36	chr15:78465200-78467800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:78465200-78467800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:78465200-78467800	Weak transcription	Osteobl	bone
39	chr15:78465200-78468200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:78465200-78468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:78465200-78469600	Weak transcription	Right Ventricle	heart
42	chr15:78465200-78469800	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:78465200-78474200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:78465200-78475000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:78465200-78475600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:78465400-78467400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr15:78465400-78467600	Enhancers	Spleen	Spleen
48	chr15:78465400-78467800	Weak transcription	Fetal Lung	lung
49	chr15:78465400-78468000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:78465400-78468200	Weak transcription	Muscle Satellite Cultured Cells	--

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