Variant report

Variant	rs3759622
Chromosome Location	chr14:24539763-24539764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24536726..24542403-chr14:24546642..24552586,6	K562	blood:
2	chr14:24538893..24542308-chr14:24563741..24565803,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129535	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11549700	1.00[JPT][hapmap]
rs2025256	1.00[JPT][hapmap]
rs2070344	1.00[CEU][hapmap]
rs2229464	1.00[CEU][hapmap]
rs2273303	1.00[CEU][hapmap]
rs2295320	1.00[MEX][hapmap]
rs4982867	1.00[MEX][hapmap]
rs55920698	1.00[EUR][1000 genomes]
rs7146888	1.00[MEX][hapmap]
rs7148694	1.00[CEU][hapmap]
rs743272	1.00[MEX][hapmap]
rs8021991	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1052180	chr14:24429298-24555710	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv516023	chr14:24489605-24550224	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1036658	chr14:24513905-24555710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
8	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
9	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24522200-24541000	Weak transcription	Spleen	Spleen
2	chr14:24522200-24547200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:24522200-24549400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:24522400-24540000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:24523000-24540800	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:24523200-24541200	Weak transcription	Esophagus	oesophagus
7	chr14:24525000-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:24528000-24540000	Weak transcription	Brain Anterior Caudate	brain
9	chr14:24528600-24541000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:24529800-24540000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:24532400-24541200	Weak transcription	Pancreas	Pancrea
12	chr14:24533600-24541800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:24534600-24540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:24536800-24541000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:24537000-24540800	Weak transcription	Colonic Mucosa	Colon
16	chr14:24537200-24541000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr14:24537400-24541000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:24538200-24541800	Weak transcription	Fetal Intestine Large	intestine
19	chr14:24538400-24541000	Weak transcription	Liver	Liver
20	chr14:24538600-24541400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr14:24538600-24543600	Enhancers	Fetal Brain Male	brain
22	chr14:24538800-24541200	Weak transcription	Brain Germinal Matrix	brain
23	chr14:24539000-24540200	Enhancers	Fetal Brain Female	brain
24	chr14:24539600-24539800	Enhancers	Brain Angular Gyrus	brain
25	chr14:24539600-24540200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:24539600-24540200	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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