Variant report

Variant	rs375975761
Chromosome Location	chr19:41336238-41336239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41333069..41334753-chr19:41334934..41336779,2	K562	blood:
2	chr19:41309668..41312632-chr19:41335922..41337729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269858	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758500	chr19:41291627-41546068	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2758762	chr19:41291627-41546068	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv911729	chr19:41321372-41383828	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2760509	chr19:41325004-41394336	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1056244	chr19:41329218-41397661	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv1827726	chr19:41329872-41395056	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1832156	chr19:41332004-41399077	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv817836	chr19:41333284-41363765	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1058732	chr19:41334726-41368987	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1058747	chr19:41334726-41376007	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv2763010	chr19:41334738-41380946	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41324800-41337400	Weak transcription	Colonic Mucosa	Colon
2	chr19:41324800-41339200	Weak transcription	Brain Germinal Matrix	brain
3	chr19:41325000-41337400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr19:41325600-41337400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:41326000-41339800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr19:41328800-41337400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr19:41329200-41337200	Weak transcription	A549	lung
8	chr19:41330000-41337800	Weak transcription	Colon Smooth Muscle	Colon
9	chr19:41330000-41339800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr19:41330200-41349400	Weak transcription	Right Ventricle	heart
11	chr19:41330400-41337200	Weak transcription	HepG2	liver
12	chr19:41331600-41337800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:41331600-41339800	Weak transcription	Fetal Lung	lung
14	chr19:41332800-41337600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr19:41333000-41337400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr19:41333200-41337400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr19:41333400-41336400	Weak transcription	Fetal Brain Male	brain
18	chr19:41333400-41336800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr19:41333400-41336800	Weak transcription	Brain Anterior Caudate	brain
20	chr19:41333400-41337200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:41333400-41337200	Weak transcription	HSMM	muscle
22	chr19:41333400-41337200	Weak transcription	HSMMtube	muscle
23	chr19:41333400-41337200	Weak transcription	NHDF-Ad	bronchial
24	chr19:41333400-41337200	Weak transcription	Osteobl	bone
25	chr19:41333400-41337400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr19:41333400-41337400	Weak transcription	Pancreas	Pancrea
27	chr19:41333400-41337400	Weak transcription	K562	blood
28	chr19:41333400-41337600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:41333400-41337600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:41333400-41338000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr19:41333400-41338400	Weak transcription	Primary T cells from cord blood	blood
32	chr19:41333400-41339200	Weak transcription	Brain Angular Gyrus	brain
33	chr19:41333400-41339200	Weak transcription	Brain Substantia Nigra	brain
34	chr19:41333600-41336600	Weak transcription	Ovary	ovary
35	chr19:41333600-41337200	Weak transcription	Adipose Nuclei	Adipose
36	chr19:41333600-41337400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr19:41333600-41339000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr19:41333600-41339200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr19:41333600-41339800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr19:41333600-41349400	Weak transcription	Left Ventricle	heart
41	chr19:41333800-41337400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr19:41333800-41339200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr19:41334000-41336400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr19:41334000-41336400	Weak transcription	Fetal Intestine Large	intestine
45	chr19:41334000-41337200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr19:41334000-41337400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr19:41334000-41337600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr19:41334000-41337800	Weak transcription	Aorta	Aorta
49	chr19:41334000-41338000	Weak transcription	Fetal Stomach	stomach
50	chr19:41334000-41338200	Weak transcription	Brain Cingulate Gyrus	brain

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