Variant report

Variant	rs375976829
Chromosome Location	chr7:47799606-47799607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:47799581-47799625	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
LINC00525	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv830990	chr7:47767540-47837584	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv606860	chr7:47799473-47802084	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv606861	chr7:47799579-47800640	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv1795007	chr7:47799579-47800769	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv1793865	chr7:47799579-47800845	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1836074	chr7:47799579-47800845	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1838538	chr7:47799579-47800845	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv1845087	chr7:47799579-47800845	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1845687	chr7:47799579-47800845	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1849250	chr7:47799579-47800845	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1839167	chr7:47799579-47800978	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv1796083	chr7:47799579-47801097	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1850736	chr7:47799579-47801226	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv16631	chr7:47799598-47801500	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47774400-47802600	Weak transcription	Pancreas	Pancrea
2	chr7:47797800-47802400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:47797800-47802800	Weak transcription	Placenta	Placenta
4	chr7:47798000-47803000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:47798200-47802400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:47798200-47802600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:47798400-47802800	Weak transcription	Fetal Kidney	kidney
8	chr7:47798400-47802800	Weak transcription	Fetal Lung	lung
9	chr7:47798400-47802800	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:47798600-47799800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:47798600-47799800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:47798600-47800400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:47798600-47802000	Weak transcription	NH-A	brain
14	chr7:47798600-47802200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:47798600-47802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:47798600-47802400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:47798600-47802600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:47798600-47802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:47798600-47802600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:47798600-47802800	Weak transcription	Adipose Nuclei	Adipose
21	chr7:47798600-47812200	Weak transcription	Aorta	Aorta
22	chr7:47798800-47802600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:47799000-47801400	Weak transcription	NHDF-Ad	bronchial
24	chr7:47799000-47801800	Weak transcription	Hela-S3	cervix
25	chr7:47799000-47802200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:47799000-47802200	Weak transcription	Osteobl	bone
27	chr7:47799200-47802400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:47799400-47801000	Weak transcription	HepG2	liver
29	chr7:47799400-47802000	Weak transcription	NHLF	lung
30	chr7:47799400-47802400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:47799400-47802400	Weak transcription	HMEC	breast
32	chr7:47799400-47802400	Weak transcription	HSMM	muscle
33	chr7:47799600-47801200	Weak transcription	A549	lung
34	chr7:47799600-47802000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:47799600-47802400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links