Variant report

Variant	rs376065698
Chromosome Location	chr20:13448612-13448613
allele	-/GAGGTTGCACC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1062049	chr20:13347580-13477455	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv544186	chr20:13347580-13477455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv585435	chr20:13410638-13582476	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv458871	chr20:13447896-13573415	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv585436	chr20:13447896-13573415	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1658099	chr20:13448611-13448622	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13379200-13463000	Weak transcription	HSMM	muscle
2	chr20:13395600-13477800	Weak transcription	Gastric	stomach
3	chr20:13421800-13450000	Weak transcription	Fetal Lung	lung
4	chr20:13422000-13460400	Weak transcription	Primary B cells from cord blood	blood
5	chr20:13422000-13461200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr20:13428400-13448800	Weak transcription	Thymus	Thymus
7	chr20:13430000-13467800	Weak transcription	Ovary	ovary
8	chr20:13430200-13467800	Weak transcription	Pancreas	Pancrea
9	chr20:13432400-13448800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr20:13433800-13452200	Weak transcription	Fetal Intestine Small	intestine
11	chr20:13434000-13450000	Weak transcription	Fetal Intestine Large	intestine
12	chr20:13434800-13449600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr20:13435400-13460400	Weak transcription	Fetal Thymus	thymus
14	chr20:13435400-13462000	Weak transcription	Left Ventricle	heart
15	chr20:13435600-13454200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr20:13435600-13460600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr20:13436600-13458800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr20:13436600-13460800	Weak transcription	Primary T cells from cord blood	blood
19	chr20:13438400-13452600	Strong transcription	Dnd41	blood
20	chr20:13438800-13450000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr20:13439600-13450000	Weak transcription	HepG2	liver
22	chr20:13442600-13461800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr20:13442600-13471600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr20:13442800-13467800	Weak transcription	Aorta	Aorta
25	chr20:13443400-13461200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr20:13444800-13452400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr20:13445000-13460200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr20:13445400-13467800	Weak transcription	Fetal Stomach	stomach
29	chr20:13445600-13449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr20:13445600-13450800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr20:13445600-13461000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr20:13446200-13460800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr20:13447400-13450000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr20:13448000-13450000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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