Variant report

Variant	rs376077620
Chromosome Location	chr11:73881765-73881766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:73881541-73882737	GM12892	blood:	n/a	n/a
2	POLR2A	chr11:73881753-73882693	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:73880935-73882779	H1-neurons	neurons:	n/a	n/a
4	ELF1	chr11:73881673-73882672	MCF-7	breast:	n/a	chr11:73881977-73881988
5	POLR2A	chr11:73881747-73882660	GM12878	blood:	n/a	n/a
6	E2F4	chr11:73881752-73882434	MCF10A-Er-Src	breast:	n/a	chr11:73881894-73881906 chr11:73882108-73882117 chr11:73882010-73882027 chr11:73881917-73881926
7	POLR2A	chr11:73881695-73882690	SK-N-SH	brain:	n/a	n/a
8	ELF1	chr11:73881706-73882526	SK-N-SH	brain:	n/a	chr11:73881977-73881988
9	RAD21	chr11:73881629-73882541	Hela-S3	cervix:	n/a	n/a
10	YY1	chr11:73881701-73882637	SK-N-SH_RA	brain:	n/a	n/a
11	SIN3AK20	chr11:73881764-73882486	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr11:73881586-73882681	GM12891	blood:	n/a	n/a
13	YY1	chr11:73881702-73882677	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr11:73881763-73882586	K562	blood:	n/a	n/a
15	RAD21	chr11:73881676-73882748	A549	lung:	n/a	n/a
16	MAX	chr11:73881589-73882668	NB4	blood:	n/a	n/a
17	POLR2A	chr11:73881738-73882108	GM12891	blood:	n/a	n/a
18	SIX5	chr11:73881541-73882862	A549	lung:	n/a	chr11:73882041-73882055 chr11:73882043-73882052 chr11:73882045-73882054
19	MAFK	chr11:73881712-73882456	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr11:73881616-73882633	ECC-1	luminal epithelium:	n/a	n/a
21	E2F6	chr11:73881741-73882774	H1-hESC	embryonic stem cell:	n/a	chr11:73881894-73881906 chr11:73882108-73882117 chr11:73882010-73882027 chr11:73881917-73881926
22	TAF1	chr11:73881754-73882118	H1-neurons	neurons:	n/a	n/a
23	TAF1	chr11:73881607-73882711	H1-hESC	embryonic stem cell:	n/a	n/a
24	GABPA	chr11:73881547-73882762	SK-N-SH	brain:	n/a	chr11:73882104-73882118 chr11:73882107-73882121 chr11:73882107-73882116 chr11:73882107-73882118
25	YY1	chr11:73881659-73882590	GM12892	blood:	n/a	n/a
26	POLR2A	chr11:73881678-73882649	K562	blood:	n/a	n/a
27	SP1	chr11:73881675-73882730	A549	lung:	n/a	chr11:73882172-73882183
28	TBP	chr11:73881548-73882692	K562	blood:	n/a	n/a
29	GATA1	chr11:73881411-73883531	PBDE	blood:	n/a	chr11:73882711-73882724
30	MAX	chr11:73881706-73883208	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr11:73881638-73882671	PANC-1	pancreas:	n/a	n/a
32	POLR2A	chr11:73881722-73882081	HepG2	liver:	n/a	n/a
33	GABPA	chr11:73881730-73882678	K562	blood:	n/a	chr11:73882104-73882118 chr11:73882107-73882121 chr11:73882107-73882116 chr11:73882107-73882118
34	MAZ	chr11:73881631-73882661	GM12878	blood:	n/a	n/a
35	POLR2A	chr11:73881651-73882629	HCT-116	colon:	n/a	n/a
36	YY1	chr11:73881644-73882318	A549	lung:	n/a	n/a
37	SIN3A	chr11:73881478-73882625	GM12878	blood:	n/a	n/a
38	FOXA2	chr11:73881452-73882584	A549	lung:	n/a	n/a
39	TAF1	chr11:73881427-73882815	H1-neurons	neurons:	n/a	n/a
40	MAX	chr11:73881750-73882951	GM12878	blood:	n/a	n/a
41	GABPA	chr11:73881732-73882550	Hela-S3	cervix:	n/a	chr11:73882104-73882118 chr11:73882107-73882121 chr11:73882107-73882116 chr11:73882107-73882118
42	SP1	chr11:73881529-73882721	A549	lung:	n/a	chr11:73882172-73882183 chr11:73881588-73881602
43	POLR2A	chr11:73881699-73882713	Hela-S3	cervix:	n/a	n/a
44	POLR2A	chr11:73881661-73882665	HUVEC	blood vessel:	n/a	n/a
45	REST	chr11:73881726-73882681	PFSK-1	brain:	n/a	chr11:73882348-73882357
46	POLR2A	chr11:73881675-73882646	HEK293	kidney:	n/a	n/a
47	NRF1	chr11:73881537-73882589	SK-N-SH	brain:	n/a	chr11:73882106-73882117 chr11:73882104-73882118 chr11:73882107-73882121 chr11:73882107-73882116 chr11:73882107-73882118
48	SIX5	chr11:73881720-73882406	GM12878	blood:	n/a	chr11:73882041-73882055 chr11:73882043-73882052 chr11:73882045-73882054
49	BRCA1	chr11:73881758-73882625	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr11:73881702-73882655	GM18526	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:73800042..73802110-chr11:73880491..73883383,2	MCF-7	breast:
2	chr11:73694022..73695981-chr11:73881444..73883965,2	MCF-7	breast:
3	chr11:73675574..73678297-chr11:73881586..73883661,2	K562	blood:
4	chr11:73692800..73696318-chr11:73880815..73883748,5	MCF-7	breast:
5	chr11:73693723..73696564-chr11:73880690..73883464,7	K562	blood:
6	chr11:73691455..73695821-chr11:73881160..73884452,10	K562	blood:
7	chr11:73780255..73782526-chr11:73881717..73883400,2	MCF-7	breast:

Variant related genes	Relation type
PPME1	TF binding region
ENSG00000175567	Chromatin interaction
ENSG00000168014	Chromatin interaction
ENSG00000255847	Chromatin interaction
ENSG00000187726	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv3369786	chr11:73881132-73881833	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3462563	chr11:73881195-73881791	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3462574	chr11:73881195-73881791	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73880200-73886600	Active TSS	HSMMtube	muscle
2	chr11:73880400-73883000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:73880600-73881800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr11:73880600-73881800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:73880600-73882000	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr11:73880600-73883600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:73880600-73883600	Active TSS	Right Atrium	heart
8	chr11:73880600-73883600	Active TSS	A549	lung
9	chr11:73880600-73883800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:73880800-73881800	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr11:73880800-73881800	Flanking Active TSS	Liver	Liver
12	chr11:73880800-73881800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr11:73880800-73883000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:73880800-73883200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:73880800-73883400	Active TSS	Esophagus	oesophagus
16	chr11:73880800-73883400	Active TSS	Left Ventricle	heart
17	chr11:73880800-73883600	Active TSS	Aorta	Aorta
18	chr11:73880800-73883600	Active TSS	Fetal Muscle Trunk	muscle
19	chr11:73880800-73884200	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr11:73881000-73881800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr11:73881000-73881800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:73881000-73881800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr11:73881000-73883200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr11:73881000-73883200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:73881000-73883200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:73881000-73883200	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr11:73881000-73883400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:73881000-73883400	Active TSS	Fetal Intestine Large	intestine
29	chr11:73881200-73881800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr11:73881200-73881800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:73881200-73881800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr11:73881200-73881800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr11:73881200-73882000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr11:73881200-73882000	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr11:73881200-73882000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:73881200-73882800	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr11:73881200-73882800	Active TSS	Brain Germinal Matrix	brain
38	chr11:73881200-73882800	Active TSS	Rectal Smooth Muscle	rectum
39	chr11:73881200-73883000	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr11:73881200-73883000	Active TSS	Muscle Satellite Cultured Cells	--
41	chr11:73881200-73883000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:73881200-73883000	Active TSS	Fetal Heart	heart
43	chr11:73881200-73883000	Active TSS	Fetal Intestine Small	intestine
44	chr11:73881200-73883000	Active TSS	Fetal Muscle Leg	muscle
45	chr11:73881200-73883000	Active TSS	Gastric	stomach
46	chr11:73881200-73883000	Active TSS	Lung	lung
47	chr11:73881200-73883000	Active TSS	Ovary	ovary
48	chr11:73881200-73883200	Active TSS	H1 Cell Line	embryonic stem cell
49	chr11:73881200-73883200	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr11:73881200-73883200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links