Variant report

Variant	rs376082788
Chromosome Location	chr15:49127251-49127252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv3426007	chr15:49126972-49127258	Genic enhancers Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49121800-49131400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:49125600-49128000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49125800-49128800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:49125800-49133600	Weak transcription	Fetal Stomach	stomach
5	chr15:49125800-49143000	Weak transcription	Psoas Muscle	Psoas
6	chr15:49126000-49127400	Strong transcription	Aorta	Aorta
7	chr15:49126000-49128000	Weak transcription	Left Ventricle	heart
8	chr15:49126000-49129200	Weak transcription	Brain Substantia Nigra	brain
9	chr15:49126000-49144800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:49126200-49129400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:49126400-49129200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:49126400-49131200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:49126400-49133600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:49126800-49129000	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:49127000-49128400	Enhancers	Placenta	Placenta
16	chr15:49127200-49166600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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