Variant report

Variant	rs376087843
Chromosome Location	chr19:51901828-51901829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:51896400..51903695-chr19:51903717..51912186,11	K562	blood:
2	chr19:51842083..51843641-chr19:51899857..51902542,2	MCF-7	breast:
3	chr19:51869222..51871840-chr19:51900203..51903169,2	MCF-7	breast:
4	chr19:51869456..51871261-chr19:51901310..51903020,2	K562	blood:
5	chr19:51864453..51872845-chr19:51892428..51902096,29	K562	blood:
6	chr19:51901444..51901990-chr19:52164321..52164914,2	K562	blood:
7	chr19:51895771..51899587-chr19:51899591..51905302,6	K562	blood:
8	chr19:51897812..51899328-chr19:51901713..51903648,2	MCF-7	breast:
9	chr19:51896327..51899206-chr19:51900445..51903528,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000160318	Chromatin interaction
ENSG00000269403	Chromatin interaction
ENSG00000268889	Chromatin interaction
ENSG00000268520	Chromatin interaction
ENSG00000268144	Chromatin interaction
ENSG00000105379	Chromatin interaction
ENSG00000186806	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv978836	chr19:51899668-51906513	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3450535	chr19:51900814-51905829	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51898400-51903000	Weak transcription	Fetal Brain Male	brain
2	chr19:51898400-51904000	Weak transcription	Fetal Brain Female	brain
3	chr19:51898600-51903200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr19:51898800-51903800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:51898800-51905400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr19:51899000-51903000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:51899000-51903000	Weak transcription	Fetal Thymus	thymus
8	chr19:51899000-51904200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr19:51899000-51904800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr19:51899000-51904800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr19:51899000-51904800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:51899000-51905000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr19:51899000-51905200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:51899000-51906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr19:51899000-51911000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:51899400-51903000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr19:51899400-51903800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr19:51899600-51903600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr19:51899800-51902800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr19:51900800-51902000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:51901800-51902400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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