The 2.0 version of rSNPBase

Variant report

Variant rs376090669
Chromosome Location chr5:60729243-60729244
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60711000-60735800 Weak transcription Monocytes-CD14+_RO01746 blood
2 chr5:60713400-60732800 Weak transcription Small Intestine intestine
3 chr5:60719200-60729400 Weak transcription Fetal Muscle Trunk muscle
4 chr5:60719800-60745200 Weak transcription NHDF-Ad bronchial
5 chr5:60720000-60733800 Weak transcription NHLF lung
6 chr5:60720000-60736400 Weak transcription Primary hematopoietic stem cells blood
7 chr5:60720000-60737400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr5:60720400-60734000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr5:60720600-60743200 Weak transcription HSMMtube muscle
10 chr5:60721000-60733000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr5:60725600-60732600 Weak transcription Fetal Heart heart
12 chr5:60725600-60737400 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr5:60725800-60732800 Weak transcription Esophagus oesophagus
14 chr5:60725800-60732800 Weak transcription Pancreas Pancrea
15 chr5:60726000-60730800 Weak transcription Fetal Brain Female brain
16 chr5:60726000-60732800 Weak transcription Left Ventricle heart
17 chr5:60726000-60732800 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr5:60726000-60733800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr5:60726000-60736600 Weak transcription Right Atrium heart
20 chr5:60726800-60745600 Weak transcription Stomach Mucosa stomach
21 chr5:60727000-60732000 Weak transcription Liver Liver
22 chr5:60727800-60729400 Enhancers HUVEC blood vessel
23 chr5:60728400-60732400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr5:60728400-60732600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr5:60728400-60732600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr5:60728400-60733400 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr5:60728400-60733600 Weak transcription Fetal Brain Male brain
28 chr5:60728400-60734000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr5:60728400-60734000 Weak transcription HSMM muscle
30 chr5:60728400-60737200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr5:60728400-60745400 Weak transcription Ovary ovary
32 chr5:60728600-60729400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr5:60728600-60729600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
34 chr5:60728600-60730200 Weak transcription Brain Inferior Temporal Lobe brain
35 chr5:60728600-60730400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr5:60728600-60730400 Weak transcription Brain Anterior Caudate brain
37 chr5:60728600-60730600 Weak transcription A549 lung
38 chr5:60728600-60731200 Weak transcription Fetal Kidney kidney
39 chr5:60728600-60732600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr5:60728600-60732800 Weak transcription HMEC breast
41 chr5:60728600-60732800 Weak transcription NHEK skin
42 chr5:60728600-60734000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr5:60728600-60734000 Weak transcription Brain Germinal Matrix brain
44 chr5:60728600-60737400 Weak transcription Fetal Lung lung
45 chr5:60728600-60737400 Weak transcription Fetal Stomach stomach
46 chr5:60728800-60729400 Enhancers Brain Substantia Nigra brain
47 chr5:60728800-60729600 Enhancers Brain Cingulate Gyrus brain
48 chr5:60728800-60732800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr5:60728800-60733800 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr5:60728800-60737600 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015