Variant report

Variant	rs3761077
Chromosome Location	chr19:19325963-19325964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2228603	0.81[ASN][1000 genomes]
rs2238675	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19323400-19326200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr19:19324600-19326000	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain
3	chr19:19324800-19326200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
4	chr19:19325000-19326000	Flanking Active TSS	Brain Germinal Matrix	brain
5	chr19:19325000-19326200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:19325200-19344600	Weak transcription	Brain Angular Gyrus	brain
7	chr19:19325400-19326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:19325400-19326600	Enhancers	Fetal Brain Male	brain
9	chr19:19325600-19326800	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
10	chr19:19325600-19329600	Weak transcription	Brain Anterior Caudate	brain
11	chr19:19325800-19326000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr19:19325800-19326000	Bivalent Enhancer	Left Ventricle	heart
13	chr19:19325800-19326200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr19:19325800-19327600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:19325800-19333200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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