Variant report

Variant	rs3761277
Chromosome Location	chr20:23329694-23329695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23329648-23333051	GM12878	blood:	n/a	n/a
2	TBP	chr20:23329650-23329787	GM12878	blood:	n/a	n/a
3	MYC	chr20:23329608-23332518	A549	lung:	n/a	chr20:23331798-23331809 chr20:23330889-23330905 chr20:23331800-23331809 chr20:23331798-23331808 chr20:23330889-23330896 chr20:23331797-23331812 chr20:23330744-23330753 chr20:23330734-23330744 chr20:23330887-23330896 chr20:23331797-23331810 chr20:23331799-23331809

No.	Distal block	Cell Line	Cell type
1	chr20:23187473..23190139-chr20:23328538..23331366,2	MCF-7	breast:
2	chr20:23328647..23330996-chr20:23399236..23401652,2	K562	blood:
3	chr20:23321273..23323325-chr20:23328933..23330875,2	K562	blood:
4	chr20:23022684..23024263-chr20:23328966..23331361,2	MCF-7	breast:
5	chr20:23112159..23115128-chr20:23328465..23330957,2	K562	blood:
6	chr20:23325694..23327438-chr20:23329149..23330658,2	MCF-7	breast:

Variant related genes	Relation type
NXT1	TF binding region
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6048743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23326000-23329800	Weak transcription	Fetal Heart	heart
2	chr20:23326200-23330000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:23327000-23330400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23327000-23330800	Weak transcription	Spleen	Spleen
5	chr20:23327200-23330000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:23327400-23330000	Weak transcription	HSMM	muscle
7	chr20:23327600-23330000	Weak transcription	Pancreas	Pancrea
8	chr20:23328000-23330000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr20:23328200-23330000	Weak transcription	Adipose Nuclei	Adipose
10	chr20:23328600-23330000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr20:23328800-23330000	Weak transcription	Fetal Kidney	kidney
12	chr20:23329000-23329800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr20:23329000-23330000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr20:23329000-23330000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr20:23329000-23330000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr20:23329000-23330000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr20:23329000-23330000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr20:23329000-23330200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr20:23329200-23329800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr20:23329400-23329800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr20:23329400-23329800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr20:23329400-23329800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr20:23329400-23329800	Enhancers	Dnd41	blood
24	chr20:23329400-23329800	Enhancers	GM12878-XiMat	blood
25	chr20:23329400-23330000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr20:23329400-23330000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr20:23329400-23330000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr20:23329400-23330000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr20:23329400-23330000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr20:23329400-23330000	Enhancers	Fetal Intestine Large	intestine
31	chr20:23329400-23330000	Enhancers	Fetal Intestine Small	intestine
32	chr20:23329400-23330000	Enhancers	Fetal Stomach	stomach
33	chr20:23329400-23330000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr20:23329400-23330000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr20:23329400-23330200	Enhancers	Fetal Muscle Leg	muscle
36	chr20:23329400-23330200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr20:23329400-23330400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr20:23329400-23330400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr20:23329400-23330400	Enhancers	Placenta	Placenta
40	chr20:23329400-23330600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr20:23329600-23329800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr20:23329600-23329800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr20:23329600-23329800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr20:23329600-23329800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr20:23329600-23329800	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr20:23329600-23329800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr20:23329600-23329800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr20:23329600-23329800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr20:23329600-23329800	Enhancers	Thymus	Thymus
50	chr20:23329600-23329800	Enhancers	A549	lung

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