Variant report

Variant	rs376154425
Chromosome Location	chr6:15445534-15445535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15245540..15247199-chr6:15445254..15446807,2	MCF-7	breast:
2	chr6:15265185..15267250-chr6:15444212..15446754,2	K562	blood:
3	chr6:15444974..15446606-chr6:15481523..15484287,2	K562	blood:
4	chr6:15445515..15448315-chr6:15457495..15459550,2	MCF-7	breast:
5	chr6:15443726..15445264-chr6:15445305..15447149,2	MCF-7	breast:
6	chr6:15443507..15446694-chr6:15446706..15448980,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3430547	chr6:15444773-15448671	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15417000-15452200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:15427000-15450800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:15429200-15446000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:15435000-15448000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:15435800-15446000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:15435800-15453600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
8	chr6:15436000-15447000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:15439000-15458000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:15439200-15450200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:15439400-15446000	Enhancers	Adipose Nuclei	Adipose
12	chr6:15439600-15445800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:15439600-15448200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:15440000-15445800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:15440000-15449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:15440000-15468600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:15440600-15445800	Weak transcription	Esophagus	oesophagus
18	chr6:15440600-15446400	Weak transcription	Gastric	stomach
19	chr6:15440600-15448200	Weak transcription	Thymus	Thymus
20	chr6:15440600-15454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:15441400-15446000	Enhancers	Liver	Liver
22	chr6:15441600-15445600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:15441600-15446400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:15441600-15447000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:15441600-15451800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:15441600-15452200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:15441600-15452200	Weak transcription	Dnd41	blood
28	chr6:15441600-15453600	Weak transcription	HSMM	muscle
29	chr6:15441800-15446400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:15441800-15447000	Weak transcription	Primary T cells from cord blood	blood
31	chr6:15441800-15448000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:15441800-15449400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:15442000-15445600	Weak transcription	Primary B cells from cord blood	blood
34	chr6:15442200-15446600	Enhancers	Brain Substantia Nigra	brain
35	chr6:15442200-15451400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:15442400-15446200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:15442400-15446600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:15442600-15445800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:15442600-15446000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:15442600-15446400	Enhancers	HMEC	breast
41	chr6:15442600-15449600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:15442800-15446200	Enhancers	Left Ventricle	heart
43	chr6:15442800-15448200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:15443000-15445600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:15443000-15446200	Enhancers	Primary hematopoietic stem cells	blood
46	chr6:15443200-15445800	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr6:15443400-15445600	Enhancers	HepG2	liver
48	chr6:15443400-15446000	Enhancers	Ovary	ovary
49	chr6:15443400-15446600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:15443400-15447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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