Variant report

Variant	rs376171560
Chromosome Location	chr3:141205673-141205674
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:142)
CpG islands
(count:122)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:142 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr3:141205521-141207007	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:141204645-141205785	U87	brain:	n/a	n/a
3	POLR2A	chr3:141205438-141206899	H1-neurons	neurons:	n/a	n/a
4	SP1	chr3:141205113-141205748	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr3:141205155-141205737	H1-hESC	embryonic stem cell:	n/a	n/a
6	BRCA1	chr3:141205427-141205675	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr3:141205479-141205749	Hela-S3	cervix:	n/a	n/a
8	MXI1	chr3:141204940-141207413	IMR90	lung:	n/a	chr3:141204946-141204961
9	CTCF	chr3:141205580-141205730	Caco-2	colon:	n/a	chr3:141205627-141205636
10	POLR2A	chr3:141205513-141206933	Raji	blood:	n/a	n/a
11	POLR2A	chr3:141204567-141206988	HepG2	liver:	n/a	n/a
12	RCOR1	chr3:141205415-141205690	K562	blood:	n/a	n/a
13	GATA3	chr3:141205504-141205850	T-47D	breast:	n/a	n/a
14	YY1	chr3:141205550-141206293	SK-N-SH	brain:	n/a	chr3:141205915-141205935 chr3:141206090-141206104 chr3:141206218-141206227 chr3:141206136-141206145 chr3:141206113-141206122 chr3:141206066-141206077
15	MAZ	chr3:141204422-141207328	IMR90	lung:	n/a	chr3:141204946-141204955 chr3:141205187-141205197 chr3:141206243-141206252
16	EGR1	chr3:141205610-141205936	GM12878	blood:	n/a	chr3:141205764-141205778
17	CTBP2	chr3:141205522-141206871	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr3:141205362-141207319	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr3:141205508-141205756	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr3:141205499-141205759	HCT-116	colon:	n/a	n/a
21	REST	chr3:141205209-141207288	H1-neurons	neurons:	n/a	chr3:141206093-141206113
22	POLR2A	chr3:141205391-141206952	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr3:141205435-141205734	U87	brain:	n/a	n/a
24	POLR2A	chr3:141205235-141206808	IMR90	lung:	n/a	n/a
25	POLR2A	chr3:141204583-141206968	HUVEC	blood vessel:	n/a	n/a
26	MAX	chr3:141205474-141207037	MCF-7	breast:	n/a	chr3:141206243-141206252
27	TCF12	chr3:141205370-141207011	ECC-1	luminal epithelium:	n/a	n/a
28	ZKSCAN1	chr3:141205563-141205990	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr3:141205591-141205733	A549	lung:	n/a	n/a
30	POLR2A	chr3:141205483-141206766	HepG2	liver:	n/a	n/a
31	IRF1	chr3:141205549-141206110	K562	blood:	n/a	n/a
32	POLR2A	chr3:141205528-141206990	K562	blood:	n/a	n/a
33	HDAC2	chr3:141205322-141205742	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr3:141205586-141206878	MCF-7	breast:	n/a	n/a
35	POLR2A	chr3:141205528-141206999	NB4	blood:	n/a	n/a
36	POLR2A	chr3:141205566-141206110	GM12878	blood:	n/a	n/a
37	EBF1	chr3:141205436-141205748	GM12878	blood:	n/a	n/a
38	TAF1	chr3:141205521-141205731	SK-N-SH	brain:	n/a	n/a
39	MAX	chr3:141205667-141207018	HepG2	liver:	n/a	chr3:141206243-141206252
40	POLR2A	chr3:141205554-141205747	H1-hESC	embryonic stem cell:	n/a	n/a
41	MYC	chr3:141205573-141206939	K562	blood:	n/a	chr3:141206243-141206252
42	EGR1	chr3:141205260-141206676	K562	blood:	n/a	chr3:141205358-141205380 chr3:141206268-141206282 chr3:141206111-141206121 chr3:141206108-141206121 chr3:141205764-141205778 chr3:141206107-141206122 chr3:141206108-141206121
43	POLR2A	chr3:141205613-141206999	GM12892	blood:	n/a	n/a
44	TCF12	chr3:141204664-141206919	A549	lung:	n/a	n/a
45	MAZ	chr3:141205544-141207059	GM12878	blood:	n/a	chr3:141206243-141206252
46	ZNF263	chr3:141205093-141206085	HEK293-T-REx	kidney:	n/a	n/a
47	MAZ	chr3:141205507-141206962	K562	blood:	n/a	chr3:141206243-141206252
48	HEY1	chr3:141205506-141205713	HepG2	liver:	n/a	n/a
49	POLR2A	chr3:141205581-141206628	HUVEC	blood vessel:	n/a	n/a
50	YY1	chr3:141205605-141205734	K562	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:141205623-141205673	HEK293	kidney:	embryo
2	chr3:141205649-141205699	HepG2	liver:	n/a
3	chr3:141205649-141205699	IMR90	lung:	fetal
4	chr3:141205623-141205673	GM12878	blood:	n/a
5	chr3:141205649-141205699	HL-60	blood:	n/a
6	chr3:141205649-141205699	PrEC	prostate:	n/a
7	chr3:141205649-141205699	H1-hESC	embryonic stem cell:	embryo
8	chr3:141205649-141205699	SK-N-SH	brain:	n/a
9	chr3:141205623-141205673	K562	blood:	n/a
10	chr3:141205623-141205673	NH-A	brain:	n/a
11	chr3:141205623-141205673	MCF-7	breast:	n/a
12	chr3:141205623-141205673	NHDF-neo	bronchial:	n/a
13	chr3:141205649-141205699	BJ	skin:	n/a
14	chr3:141205623-141205673	HepG2	liver:	n/a
15	chr3:141205623-141205673	CMK	blood:	n/a
16	chr3:141205623-141205673	HCT-116	colon:	n/a
17	chr3:141205623-141205673	HPAEpiC	pulmonary alveolar:	n/a
18	chr3:141205649-141205699	PANC-1	pancreas:	n/a
19	chr3:141205649-141205699	NT2-D1	testis:	n/a
20	chr3:141205623-141205673	SAEC	small airway:	n/a
21	chr3:141205649-141205699	GM12878	blood:	n/a
22	chr3:141205623-141205673	NB4	blood:	n/a
23	chr3:141205649-141205699	GM19239	blood:	n/a
24	chr3:141205623-141205673	AG09309	skin:	n/a
25	chr3:141205623-141205673	PANC-1	pancreas:	n/a
26	chr3:141205649-141205699	GM12891	blood:	n/a
27	chr3:141205623-141205673	ovcar-3	ovarian:	n/a
28	chr3:141205623-141205673	HRCEpiC	kidney:	n/a
29	chr3:141205649-141205699	ovcar-3	ovarian:	n/a
30	chr3:141205623-141205673	HIPEpiC	eye:	n/a
31	chr3:141205623-141205673	HMEC	breast:	n/a
32	chr3:141205623-141205673	AG10803	skin:	n/a
33	chr3:141205623-141205673	HRE	kidney:	n/a
34	chr3:141205649-141205699	HMEC	breast:	n/a
35	chr3:141205649-141205699	AG04449	skin:	fetal
36	chr3:141205623-141205673	MCF10A-Er-Src	breast:	n/a
37	chr3:141205649-141205699	NB4	blood:	n/a
38	chr3:141205649-141205699	CMK	blood:	n/a
39	chr3:141205649-141205699	Hepatocyte	liver:	n/a
40	chr3:141205649-141205699	MCF10A-Er-Src	breast:	n/a
41	chr3:141205649-141205699	AG09319	gingival:	n/a
42	chr3:141205623-141205673	IMR90	lung:	fetal
43	chr3:141205623-141205673	Jurkat	blood:	n/a
44	chr3:141205623-141205673	T-47D	breast:	n/a
45	chr3:141205623-141205673	BJ	skin:	n/a
46	chr3:141205649-141205699	Caco-2	colon:	n/a
47	chr3:141205649-141205699	AoSMC	blood vessel:	n/a
48	chr3:141205649-141205699	RPTEC	kidney:	n/a
49	chr3:141205623-141205673	GM12892	blood:	n/a
50	chr3:141205649-141205699	HRCEpiC	kidney:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141204551..141207938-chr3:141241119..141245308,6	MCF-7	breast:
2	chr3:141189849..141195094-chr3:141204829..141208801,7	MCF-7	breast:
3	chr3:141085187..141087816-chr3:141204878..141206678,4	MCF-7	breast:
4	chr3:141205080..141206779-chr6:76458156..76460847,2	MCF-7	breast:
5	chr3:141085737..141089975-chr3:141204779..141207356,5	K562	blood:

No data

Variant related genes	Relation type
RASA2	TF binding region
RASA2	CpG island
ENSG00000177311	Chromatin interaction
ENSG00000196586	Chromatin interaction
ENSG00000250170	Chromatin interaction
ENSG00000215606	Chromatin interaction
ENSG00000249417	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3423260	chr3:141204887-141207435	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141204200-141205800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:141204200-141208000	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr3:141204400-141205800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr3:141204600-141205800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:141204600-141205800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:141204800-141205800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr3:141204800-141207400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr3:141205000-141207000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:141205000-141207000	Active TSS	Fetal Kidney	kidney
10	chr3:141205000-141207400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr3:141205000-141207600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr3:141205200-141205800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr3:141205200-141205800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:141205200-141205800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:141205200-141205800	Active TSS	Right Atrium	heart
16	chr3:141205200-141205800	Flanking Active TSS	Dnd41	blood
17	chr3:141205200-141206000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:141205200-141206200	Active TSS	Brain Germinal Matrix	brain
19	chr3:141205200-141207000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr3:141205200-141207000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:141205200-141207000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:141205200-141207000	Active TSS	Fetal Brain Female	brain
23	chr3:141205200-141207200	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr3:141205200-141207200	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr3:141205200-141207200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:141205200-141207200	Active TSS	Brain Substantia Nigra	brain
27	chr3:141205200-141207400	Active TSS	H1 Cell Line	embryonic stem cell
28	chr3:141205200-141207400	Active TSS	Brain Cingulate Gyrus	brain
29	chr3:141205400-141205800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr3:141205400-141205800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:141205400-141205800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:141205400-141205800	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr3:141205400-141205800	Flanking Active TSS	Placenta	Placenta
34	chr3:141205400-141205800	Flanking Active TSS	Fetal Thymus	thymus
35	chr3:141205400-141205800	Weak transcription	Spleen	Spleen
36	chr3:141205400-141206800	Active TSS	Brain Hippocampus Middle	brain
37	chr3:141205400-141206800	Active TSS	Stomach Smooth Muscle	stomach
38	chr3:141205400-141207000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:141205400-141207000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:141205400-141207000	Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr3:141205400-141207000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:141205400-141207000	Active TSS	Aorta	Aorta
43	chr3:141205400-141207000	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr3:141205400-141207000	Active TSS	Esophagus	oesophagus
45	chr3:141205400-141207000	Active TSS	Gastric	stomach
46	chr3:141205400-141207000	Active TSS	Left Ventricle	heart
47	chr3:141205400-141207000	Active TSS	Ovary	ovary
48	chr3:141205400-141207000	Active TSS	Pancreas	Pancrea
49	chr3:141205400-141207000	Active TSS	Placenta Amnion	Placenta Amnion
50	chr3:141205400-141207000	Active TSS	Sigmoid Colon	Sigmoid Colon

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