Variant report

Variant	rs376175944
Chromosome Location	chr20:25047174-25047175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:24974184..24976552-chr20:25044724..25047326,32	MCF-7	breast:
2	chr20:24972253..24980445-chr20:25044479..25049663,13	MCF-7	breast:
3	chr20:25043693..25045702-chr20:25047001..25049231,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACSS1-1	chr20:25047157-25047179	NONHSAT079124

Variant related genes	Relation type
ENSG00000101474	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3345945	chr20:25046552-25049850	Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3361205	chr20:25046552-25049950	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25044600-25047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:25044800-25047400	Enhancers	Placenta	Placenta
3	chr20:25045000-25047400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:25045200-25047200	Enhancers	Fetal Intestine Large	intestine
5	chr20:25045400-25047800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:25045800-25048000	Enhancers	Gastric	stomach
7	chr20:25046200-25047400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr20:25046200-25047800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr20:25046400-25047200	Weak transcription	Pancreas	Pancrea
10	chr20:25046400-25047800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:25046400-25047800	Weak transcription	Lung	lung
12	chr20:25046400-25047800	Weak transcription	Right Ventricle	heart
13	chr20:25046400-25048000	Weak transcription	Esophagus	oesophagus
14	chr20:25046400-25048000	Weak transcription	Spleen	Spleen
15	chr20:25046400-25057200	Weak transcription	Brain Substantia Nigra	brain
16	chr20:25046600-25047200	Enhancers	HepG2	liver
17	chr20:25046600-25052000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr20:25046800-25047200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr20:25046800-25047800	Weak transcription	Fetal Kidney	kidney
20	chr20:25046800-25057400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr20:25046800-25058200	Weak transcription	Right Atrium	heart
22	chr20:25047000-25047200	Flanking Active TSS	A549	lung

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