Variant report

Variant	rs376184486
Chromosome Location	chr11:75478734-75478735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr11:75478648-75480145	GM12878	blood:	n/a	n/a
2	E2F6	chr11:75477812-75480302	H1-hESC	embryonic stem cell:	n/a	chr11:75479823-75479833

No.	Distal block	Cell Line	Cell type
1	chr11:75478711..75481665-chr11:75512333..75514833,3	MCF-7	breast:
2	chr11:75416987..75417519-chr11:75478728..75479439,2	MCF-7	breast:
3	chr11:75477223..75481853-chr11:75500623..75503657,5	MCF-7	breast:

Variant related genes	Relation type
DGAT2	TF binding region
ENSG00000254814	Chromatin interaction
ENSG00000062282	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	esv3360811	chr11:75478729-75481277	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75474800-75479000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:75475200-75479000	Weak transcription	Pancreas	Pancrea
3	chr11:75475600-75479200	Weak transcription	HMEC	breast
4	chr11:75475800-75478800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:75475800-75478800	Weak transcription	Liver	Liver
6	chr11:75476200-75478800	Enhancers	HepG2	liver
7	chr11:75477000-75479000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:75477000-75479000	Enhancers	GM12878-XiMat	blood
9	chr11:75477000-75479200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:75477000-75479200	Enhancers	Adipose Nuclei	Adipose
11	chr11:75477400-75479000	Weak transcription	Gastric	stomach
12	chr11:75477600-75479000	Enhancers	K562	blood
13	chr11:75477800-75479000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:75477800-75479000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:75477800-75479200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:75477800-75479200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:75477800-75479200	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr11:75477800-75479400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:75478000-75479000	Enhancers	Primary B cells from peripheral blood	blood
20	chr11:75478000-75479200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:75478000-75481800	Enhancers	Fetal Heart	heart
22	chr11:75478200-75478800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:75478200-75478800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr11:75478200-75479200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:75478200-75479400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:75478200-75479400	Enhancers	Spleen	Spleen
27	chr11:75478400-75479000	Bivalent Enhancer	Colonic Mucosa	Colon
28	chr11:75478400-75479000	Enhancers	Stomach Smooth Muscle	stomach
29	chr11:75478400-75479400	Enhancers	Left Ventricle	heart
30	chr11:75478400-75480000	Enhancers	Lung	lung
31	chr11:75478600-75479000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:75478600-75479000	Weak transcription	Right Atrium	heart
33	chr11:75478600-75479000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr11:75478600-75479200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:75478600-75479200	Bivalent Enhancer	Fetal Intestine Large	intestine

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