Variant report

Variant	rs3762160
Chromosome Location	chr14:21943384-21943385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21943182..21946742-chr14:21976824..21981257,10	MCF-7	breast:
2	chr14:21941999..21943965-chr14:21954802..21956942,2	K562	blood:
3	chr14:21922608..21930261-chr14:21941288..21947915,21	MCF-7	breast:
4	chr14:21943174..21947446-chr14:21976603..21980796,8	K562	blood:
5	chr14:21926286..21927863-chr14:21941529..21943943,2	K562	blood:
6	chr14:21941797..21947093-chr14:21954513..21961521,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092203	Chromatin interaction
ENSG00000100888	Chromatin interaction
ENSG00000165819	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10141933	0.80[ASN][1000 genomes]
rs10142478	0.80[ASN][1000 genomes]
rs11156996	0.80[ASN][1000 genomes]
rs1263788	0.80[ASN][1000 genomes]
rs1263790	0.80[ASN][1000 genomes]
rs1263797	0.80[ASN][1000 genomes]
rs1263798	0.80[ASN][1000 genomes]
rs1794219	0.80[ASN][1000 genomes]
rs3762162	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6571843	0.82[ASN][1000 genomes]
rs6571844	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6571845	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6571846	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7141654	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7151259	0.80[ASN][1000 genomes]
rs7157563	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7157961	0.80[ASN][1000 genomes]
rs7159433	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8005163	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013109	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21924800-21944600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:21925000-21943800	Weak transcription	HMEC	breast
3	chr14:21925000-21944000	Weak transcription	Stomach Mucosa	stomach
4	chr14:21925000-21944400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:21925000-21944600	Weak transcription	Small Intestine	intestine
6	chr14:21925200-21943800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:21927200-21943400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:21927800-21943400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:21929400-21943600	Weak transcription	NHEK	skin
10	chr14:21930000-21943600	Weak transcription	Gastric	stomach
11	chr14:21930000-21943800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:21930200-21943800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:21930200-21943800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:21930200-21944000	Weak transcription	Brain Angular Gyrus	brain
15	chr14:21930200-21944400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:21930400-21944000	Weak transcription	Pancreas	Pancrea
17	chr14:21930600-21943600	Weak transcription	A549	lung
18	chr14:21931800-21944000	Weak transcription	Esophagus	oesophagus
19	chr14:21932000-21944000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:21932000-21944400	Weak transcription	Psoas Muscle	Psoas
21	chr14:21932800-21944000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:21933200-21944600	Weak transcription	Spleen	Spleen
23	chr14:21934600-21943800	Weak transcription	Fetal Brain Female	brain
24	chr14:21934600-21944600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:21935400-21943600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:21935600-21943800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:21935600-21944600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:21935800-21944400	Weak transcription	HSMMtube	muscle
29	chr14:21936000-21944000	Weak transcription	Fetal Brain Male	brain
30	chr14:21936000-21944000	Weak transcription	Right Ventricle	heart
31	chr14:21936200-21943600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:21936200-21943800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:21936200-21943800	Weak transcription	NHLF	lung
34	chr14:21936400-21944000	Weak transcription	Colonic Mucosa	Colon
35	chr14:21936600-21943800	Weak transcription	Fetal Heart	heart
36	chr14:21936800-21943800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:21937000-21943600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:21937000-21943800	Weak transcription	Brain Anterior Caudate	brain
39	chr14:21937000-21943800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:21937000-21944000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:21937000-21944000	Weak transcription	Ovary	ovary
42	chr14:21937000-21944400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr14:21937200-21943600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:21937200-21943800	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:21937200-21944000	Weak transcription	Placenta	Placenta
46	chr14:21937200-21944400	Weak transcription	Aorta	Aorta
47	chr14:21937600-21944000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr14:21938200-21943400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:21940000-21943800	Weak transcription	Primary B cells from peripheral blood	blood
50	chr14:21940400-21943600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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