Variant report

Variant	rs376228439
Chromosome Location	chr6:150080627-150080628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150080552..150082933-chr6:150085162..150087881,2	K562	blood:
2	chr6:150067902..150070845-chr6:150079961..150081547,2	K562	blood:
3	chr6:150071337..150080563-chr6:150080588..150087592,16	K562	blood:
4	chr6:150080535..150082998-chr6:150090034..150092678,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120253	Chromatin interaction
ENSG00000120265	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3474317	chr6:150080191-150081006	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3474318	chr6:150080191-150081006	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071800-150081200	Weak transcription	Spleen	Spleen
2	chr6:150071800-150092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:150071800-150100200	Weak transcription	Gastric	stomach
5	chr6:150072000-150081000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:150072000-150081200	Weak transcription	Placenta	Placenta
7	chr6:150072000-150081600	Weak transcription	Fetal Stomach	stomach
8	chr6:150072000-150086800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:150072000-150087000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:150072000-150087200	Weak transcription	Stomach Mucosa	stomach
11	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
13	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
14	chr6:150072200-150080800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:150072200-150081000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:150072200-150081000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:150072200-150081200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:150072200-150087000	Weak transcription	Fetal Lung	lung
19	chr6:150072200-150087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:150072200-150087200	Weak transcription	Primary T cells from cord blood	blood
21	chr6:150072200-150087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:150072200-150087200	Weak transcription	NH-A	brain
23	chr6:150072400-150081000	Weak transcription	HSMM	muscle
24	chr6:150072400-150081000	Weak transcription	HSMMtube	muscle
25	chr6:150072400-150081000	Weak transcription	Osteobl	bone
26	chr6:150072400-150081400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:150072400-150086800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:150072400-150087200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
31	chr6:150072600-150080800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:150072600-150081000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:150072600-150087000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:150072600-150087200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:150072600-150087200	Weak transcription	NHEK	skin
36	chr6:150072800-150081000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:150072800-150081000	Weak transcription	Brain Germinal Matrix	brain
38	chr6:150072800-150081200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:150072800-150081200	Weak transcription	HMEC	breast
40	chr6:150072800-150087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr6:150073000-150086800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:150073000-150086800	Weak transcription	Fetal Brain Female	brain
43	chr6:150073000-150087200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:150073000-150094400	Weak transcription	Lung	lung
45	chr6:150073200-150081000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:150073200-150081000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:150073200-150087200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:150073200-150087200	Weak transcription	HUVEC	blood vessel
49	chr6:150073400-150081000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr6:150073400-150083400	Weak transcription	Ovary	ovary

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