Variant report

Variant	rs3762588
Chromosome Location	chr2:234217462-234217463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10192702	0.83[JPT][hapmap]
rs10210302	0.83[JPT][hapmap]
rs1045100	0.83[JPT][hapmap]
rs10929322	0.83[JPT][hapmap]
rs12994997	0.83[JPT][hapmap]
rs13009506	0.83[JPT][hapmap]
rs13035837	0.81[JPT][hapmap]
rs13391356	0.83[JPT][hapmap]
rs1441092	0.81[JPT][hapmap]
rs2241879	0.83[JPT][hapmap]
rs2241880	0.83[JPT][hapmap]
rs2289472	0.83[JPT][hapmap]
rs2289474	0.83[JPT][hapmap]
rs2289477	0.83[JPT][hapmap]
rs3792108	0.83[JPT][hapmap]
rs3792109	0.83[JPT][hapmap]
rs3828309	0.83[JPT][hapmap]
rs6431654	0.83[JPT][hapmap]
rs6752107	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584699	chr2:234182240-234255547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv584700	chr2:234199401-234364426	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234205400-234219800	Weak transcription	Spleen	Spleen
2	chr2:234206000-234218600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:234206400-234218800	Weak transcription	Right Atrium	heart
4	chr2:234217400-234217600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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