Variant report

Variant	rs376264381
Chromosome Location	chr6:150286537-150286538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150285227..150287207-chr6:150324215..150327395,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2217053	chr6:150286121-150286576	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150284000-150286600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
3	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
4	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
5	chr6:150284200-150286800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:150284200-150286800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:150284200-150286800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:150284200-150287000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr6:150284400-150286600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
11	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
12	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
15	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
16	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
17	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Placenta	Placenta
18	chr6:150284400-150286600	Bivalent/Poised TSS	Psoas Muscle	Psoas
19	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
20	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
23	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
24	chr6:150284600-150286600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr6:150284600-150286600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:150284600-150286600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:150284600-150286600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
28	chr6:150284600-150286800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:150284600-150286800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr6:150284600-150286800	Active TSS	HSMMtube	muscle
31	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
32	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
35	chr6:150284800-150286600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
36	chr6:150284800-150286600	Bivalent/Poised TSS	Left Ventricle	heart
37	chr6:150284800-150286800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
38	chr6:150284800-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
39	chr6:150285000-150286600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:150285000-150286600	Flanking Bivalent TSS/Enh	HMEC	breast
41	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
44	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
45	chr6:150285200-150286600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
46	chr6:150285200-150286600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:150285200-150286600	Flanking Bivalent TSS/Enh	NH-A	brain
48	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
50	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links