Variant report

Variant	rs3762776
Chromosome Location	chr3:22420554-22420555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22420213..22422752-chr3:22425859..22427632,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1121249	0.83[GIH][hapmap]
rs11709549	0.82[EUR][1000 genomes]
rs11710808	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs1603023	0.83[GIH][hapmap]
rs3749374	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs3762777	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3762778	0.99[EUR][1000 genomes]
rs4858402	0.83[GIH][hapmap]
rs6769705	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs7614013	0.84[CEU][hapmap]
rs7616332	0.81[CEU][hapmap]
rs7616503	0.85[CEU][hapmap]
rs7619731	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs7624127	0.84[CEU][hapmap]
rs9811913	0.82[CEU][hapmap]
rs9820419	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9844836	0.81[EUR][1000 genomes]
rs9844916	0.83[CEU][hapmap];0.83[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs9845451	0.81[EUR][1000 genomes]
rs9845488	0.80[EUR][1000 genomes]
rs9876850	0.80[EUR][1000 genomes]
rs9882764	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links