Variant report

Variant	rs376324957
Chromosome Location	chr4:46911417-46911418
allele	-/TAAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:46911157-46911443	T-47D	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:46911374-46911424	MCF-7	breast:	n/a
2	chr4:46911374-46911424	PANC-1	pancreas:	n/a
3	chr4:46911374-46911424	HL-60	blood:	n/a
4	chr4:46911374-46911424	ovcar-3	ovarian:	n/a
5	chr4:46911374-46911424	NT2-D1	testis:	n/a
6	chr4:46911374-46911424	SKMC	muscle:	n/a
7	chr4:46911374-46911424	SK-N-SH	brain:	n/a
8	chr4:46911374-46911424	GM12891	blood:	n/a
9	chr4:46911374-46911424	HCPEpiC	choroid plexus:	n/a
10	chr4:46911374-46911424	GM12892	blood:	n/a
11	chr4:46911374-46911424	SK-N-SH_RA	brain:	n/a
12	chr4:46911374-46911424	K562	blood:	n/a
13	chr4:46911374-46911424	Hepatocyte	liver:	n/a
14	chr4:46911374-46911424	HEEpiC	esophagus:	n/a
15	chr4:46911374-46911424	LNCaP	prostate:	n/a
16	chr4:46911374-46911424	GM06990	blood:	n/a
17	chr4:46911374-46911424	HUVEC	blood vessel:	n/a
18	chr4:46911374-46911424	A549	lung:	n/a
19	chr4:46911374-46911424	HNPCEpiC	eye:	n/a
20	chr4:46911374-46911424	NHDF-neo	bronchial:	n/a
21	chr4:46911374-46911424	HIPEpiC	eye:	n/a
22	chr4:46911374-46911424	GM12878	blood:	n/a
23	chr4:46911374-46911424	HEK293	kidney:	embryo
24	chr4:46911374-46911424	AG04450	lung:	fetal
25	chr4:46911374-46911424	SAEC	small airway:	n/a
26	chr4:46911374-46911424	HRE	kidney:	n/a
27	chr4:46911374-46911424	AG04449	skin:	fetal
28	chr4:46911374-46911424	NB4	blood:	n/a
29	chr4:46911374-46911424	RPTEC	kidney:	n/a
30	chr4:46911374-46911424	AG09309	skin:	n/a
31	chr4:46911374-46911424	T-47D	breast:	n/a
32	chr4:46911374-46911424	BE2_C	brain:	n/a
33	chr4:46911374-46911424	BJ	skin:	n/a
34	chr4:46911374-46911424	H1-hESC	embryonic stem cell:	embryo
35	chr4:46911374-46911424	Caco-2	colon:	n/a
36	chr4:46911374-46911424	HMEC	breast:	n/a
37	chr4:46911374-46911424	U87	brain:	n/a
38	chr4:46911374-46911424	SK-N-MC	brain:	n/a
39	chr4:46911374-46911424	PrEC	prostate:	n/a
40	chr4:46911374-46911424	HepG2	liver:	n/a
41	chr4:46911374-46911424	AG10803	skin:	n/a
42	chr4:46911374-46911424	HCM	heart:	n/a
43	chr4:46911374-46911424	GM19239	blood:	n/a
44	chr4:46911374-46911424	ECC-1	luminal epithelium:	n/a
45	chr4:46911374-46911424	HCF	heart:	n/a
46	chr4:46911374-46911424	Jurkat	blood:	n/a
47	chr4:46911374-46911424	PFSK-1	brain:	n/a
48	chr4:46911374-46911424	CMK	blood:	n/a
49	chr4:46911374-46911424	IMR90	lung:	fetal
50	chr4:46911374-46911424	MCF10A-Er-Src	breast:	n/a

No data

Variant related genes	Relation type
COX7B2	TF binding region
COX7B2	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879002	chr4:46911379-46940376	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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