Variant report

Variant	rs3763384
Chromosome Location	chr7:4876057-4876058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:4876057-4876107	NT2-D1	testis:	n/a
2	chr7:4876057-4876107	MCF-7	breast:	n/a
3	chr7:4876057-4876107	H1-hESC	embryonic stem cell:	embryo
4	chr7:4876057-4876107	AG04450	lung:	fetal
5	chr7:4876057-4876107	HNPCEpiC	eye:	n/a
6	chr7:4876057-4876107	PFSK-1	brain:	n/a
7	chr7:4876057-4876107	AG10803	skin:	n/a
8	chr7:4876057-4876107	HCF	heart:	n/a
9	chr7:4876057-4876107	BE2_C	brain:	n/a
10	chr7:4876057-4876107	AG04449	skin:	fetal
11	chr7:4876057-4876107	HEEpiC	esophagus:	n/a
12	chr7:4876057-4876107	HCT-116	colon:	n/a
13	chr7:4876057-4876107	ProgFib	skin:	n/a
14	chr7:4876057-4876107	BJ	skin:	n/a
15	chr7:4876057-4876107	SK-N-SH	brain:	n/a
16	chr7:4876057-4876107	HRPEpiC	eye:	n/a
17	chr7:4876057-4876107	K562	blood:	n/a
18	chr7:4876057-4876107	Jurkat	blood:	n/a
19	chr7:4876057-4876107	AG09319	gingival:	n/a
20	chr7:4876057-4876107	AG09309	skin:	n/a
21	chr7:4876057-4876107	LNCaP	prostate:	n/a
22	chr7:4876057-4876107	NH-A	brain:	n/a
23	chr7:4876057-4876107	HUVEC	blood vessel:	n/a
24	chr7:4876057-4876107	SK-N-MC	brain:	n/a
25	chr7:4876057-4876107	HCM	heart:	n/a
26	chr7:4876057-4876107	U87	brain:	n/a
27	chr7:4876057-4876107	SKMC	muscle:	n/a
28	chr7:4876057-4876107	AoSMC	blood vessel:	n/a
29	chr7:4876057-4876107	PrEC	prostate:	n/a
30	chr7:4876057-4876107	RPTEC	kidney:	n/a
31	chr7:4876057-4876107	HIPEpiC	eye:	n/a
32	chr7:4876057-4876107	PANC-1	pancreas:	n/a
33	chr7:4876057-4876107	NHDF-neo	bronchial:	n/a
34	chr7:4876057-4876107	ECC-1	luminal epithelium:	n/a
35	chr7:4876057-4876107	HepG2	liver:	n/a
36	chr7:4876057-4876107	HL-60	blood:	n/a
37	chr7:4876057-4876107	HMEC	breast:	n/a
38	chr7:4876057-4876107	HAEpiC	amniotic membrane:	n/a
39	chr7:4876057-4876107	GM19239	blood:	n/a
40	chr7:4876057-4876107	GM12892	blood:	n/a
41	chr7:4876057-4876107	GM12891	blood:	n/a
42	chr7:4876057-4876107	HPAEpiC	pulmonary alveolar:	n/a
43	chr7:4876057-4876107	Hela-S3	cervix:	n/a
44	chr7:4876057-4876107	T-47D	breast:	n/a
45	chr7:4876057-4876107	SAEC	small airway:	n/a
46	chr7:4876057-4876107	NHBE	bronchial:	n/a
47	chr7:4876057-4876107	A549	lung:	n/a
48	chr7:4876057-4876107	CMK	blood:	n/a
49	chr7:4876057-4876107	HCPEpiC	choroid plexus:	n/a
50	chr7:4876057-4876107	ovcar-3	ovarian:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:4868554..4870094-chr7:4875311..4876869,2	MCF-7	breast:
2	chr7:4874680..4876574-chr7:4882642..4885395,2	MCF-7	breast:
3	chr7:4836973..4839244-chr7:4874732..4876620,2	K562	blood:
4	chr7:4863236..4866075-chr7:4873868..4876399,2	MCF-7	breast:

No data

Variant related genes	Relation type
RADIL	CpG island

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17135213	1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1877521	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877522	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2292498	0.86[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34927399	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763386	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793141	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4724109	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6949969	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv887378	chr7:4730535-4929721	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv887380	chr7:4760124-4929721	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv471293	chr7:4764861-4885221	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv887381	chr7:4769030-4880954	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv823994	chr7:4792385-4928328	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv887382	chr7:4792762-4880954	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv8033	chr7:4802287-5086597	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
12	nsv1022678	chr7:4810626-5113387	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv538705	chr7:4810626-5113387	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv528748	chr7:4820581-5010993	Enhancers Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1029123	chr7:4821734-4919277	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
16	nsv887388	chr7:4823971-4880954	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1021170	chr7:4831361-5058033	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv538706	chr7:4831361-5058033	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
19	nsv1025467	chr7:4850447-5021443	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv605979	chr7:4854592-4944514	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1021999	chr7:4862082-5003190	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv538707	chr7:4862082-5003190	Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1033855	chr7:4862677-5069764	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv605980	chr7:4876057-5003373	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4834800-4876800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:4836200-4877600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:4846800-4876600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:4859200-4879800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:4861000-4876800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:4861000-4877600	Weak transcription	Right Atrium	heart
7	chr7:4865000-4877800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:4865000-4882000	Weak transcription	Ovary	ovary
9	chr7:4865000-4885200	Weak transcription	Brain Anterior Caudate	brain
10	chr7:4869800-4876600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:4869800-4877000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:4870200-4876800	Weak transcription	Adipose Nuclei	Adipose
13	chr7:4870200-4877000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:4870200-4881200	Weak transcription	Spleen	Spleen
15	chr7:4871400-4876800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:4871600-4876200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:4872000-4877800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:4873200-4876600	Weak transcription	Fetal Lung	lung
19	chr7:4873200-4877000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:4873400-4876200	Strong transcription	Brain Germinal Matrix	brain
21	chr7:4873800-4877000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:4874200-4876800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:4875000-4876200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:4875000-4877000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:4875000-4877000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:4875200-4878600	Bivalent Enhancer	Placenta	Placenta
27	chr7:4875200-4880800	Weak transcription	Gastric	stomach
28	chr7:4875800-4876200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:4875800-4876600	Weak transcription	Right Ventricle	heart
30	chr7:4875800-4876800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:4875800-4876800	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:4876000-4876600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:4876000-4876600	Weak transcription	Fetal Stomach	stomach
34	chr7:4876000-4876800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:4876000-4876800	Weak transcription	Fetal Brain Female	brain
36	chr7:4876000-4876800	Weak transcription	Lung	lung
37	chr7:4876000-4877600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:4876000-4877600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:4876000-4881800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links