Variant report

Variant	rs376340504
Chromosome Location	chr8:105479044-105479045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	esv3328158	chr8:105477801-105480349	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105477600-105479400	Active TSS	Liver	Liver
2	chr8:105478400-105479400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr8:105478400-105479600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr8:105478400-105479600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr8:105478400-105479600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr8:105478400-105479600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:105478600-105479200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:105478600-105479200	Bivalent Enhancer	Esophagus	oesophagus
9	chr8:105478600-105479200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
10	chr8:105478600-105479400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr8:105478600-105479400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr8:105478600-105479400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:105478600-105479400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:105478600-105479400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr8:105478600-105479400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr8:105478600-105479400	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr8:105478600-105479400	Active TSS	Ovary	ovary
21	chr8:105478600-105479400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
22	chr8:105478600-105479400	Bivalent/Poised TSS	Thymus	Thymus
23	chr8:105478600-105479400	Bivalent/Poised TSS	HepG2	liver
24	chr8:105478600-105479600	Active TSS	H9 Cell Line	embryonic stem cell
25	chr8:105478600-105479600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:105478600-105479600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr8:105478600-105479600	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr8:105478800-105479200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:105478800-105479200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:105478800-105479200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:105478800-105479200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
32	chr8:105478800-105479200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
33	chr8:105478800-105479200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
34	chr8:105478800-105479200	Bivalent Enhancer	Fetal Brain Male	brain
35	chr8:105478800-105479200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr8:105478800-105479200	Enhancers	Gastric	stomach
37	chr8:105478800-105479200	Bivalent Enhancer	Lung	lung
38	chr8:105478800-105479200	Transcr. at gene 5' and 3'	Right Atrium	heart
39	chr8:105478800-105479200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
40	chr8:105478800-105479200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
41	chr8:105478800-105479200	Enhancers	Spleen	Spleen
42	chr8:105478800-105479200	Flanking Bivalent TSS/Enh	HMEC	breast
43	chr8:105478800-105479400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr8:105478800-105479400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:105478800-105479400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:105478800-105479400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:105478800-105479400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:105478800-105479400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr8:105478800-105479400	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr8:105478800-105479400	Active TSS	Aorta	Aorta

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