Variant report

Variant	rs3763700
Chromosome Location	chr10:6181709-6181710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6181525..6183322-chr10:6221078..6223708,2	MCF-7	breast:
2	chr10:6060947..6063701-chr10:6181512..6183483,2	K562	blood:
3	chr10:6171306..6174580-chr10:6176089..6182503,5	MCF-7	breast:
4	chr10:6157377..6159891-chr10:6179224..6181720,2	MCF-7	breast:
5	chr10:6180971..6185195-chr10:6203384..6207419,4	MCF-7	breast:
6	chr10:6179137..6182411-chr10:6242546..6245142,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11598494	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1972409	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983890	0.93[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894816	chr10:6173416-6190343	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3763700	ANKRD16	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6171400-6183200	Weak transcription	Right Atrium	heart
2	chr10:6172200-6182800	Weak transcription	Brain Angular Gyrus	brain
3	chr10:6172400-6182200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:6176600-6185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:6176800-6182000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:6177200-6181800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:6177200-6182000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:6178200-6182000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:6178600-6182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:6179000-6182000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:6179000-6182000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:6179000-6182000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:6179000-6182400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:6179200-6182000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:6179200-6182200	Weak transcription	HSMM	muscle
16	chr10:6179400-6181800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:6179400-6182000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:6179400-6182000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:6179400-6182000	Weak transcription	Adipose Nuclei	Adipose
20	chr10:6179400-6182400	Weak transcription	NHLF	lung
21	chr10:6179400-6182600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:6180600-6183400	Weak transcription	Esophagus	oesophagus
23	chr10:6181000-6182200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:6181200-6182400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:6181400-6182000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:6181600-6182000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:6181600-6182000	Enhancers	Dnd41	blood
28	chr10:6181600-6182400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:6181600-6182600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:6181600-6182800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:6181600-6183200	Enhancers	Fetal Thymus	thymus
32	chr10:6181600-6183600	Enhancers	Spleen	Spleen
33	chr10:6181600-6184000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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