Variant report

Variant	rs376376187
Chromosome Location	chr1:180887018-180887019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180850757..180851768-chr1:180886019..180887077,4	MCF-7	breast:
2	chr1:180885638..180890175-chr1:180892218..180894358,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv872579	chr1:180881148-180931508	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1001918	chr1:180886750-180908005	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180882400-180894600	Weak transcription	Pancreas	Pancrea
2	chr1:180882600-180894000	Weak transcription	Brain Substantia Nigra	brain
3	chr1:180882800-180887200	Weak transcription	Placenta	Placenta
4	chr1:180882800-180887400	Weak transcription	Gastric	stomach
5	chr1:180882800-180888000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:180882800-180889400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:180882800-180891200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:180882800-180892600	Weak transcription	Esophagus	oesophagus
9	chr1:180882800-180894400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:180883000-180891200	Weak transcription	Fetal Brain Female	brain
11	chr1:180883000-180891600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:180883000-180892200	Weak transcription	Brain Germinal Matrix	brain
13	chr1:180883000-180894600	Weak transcription	Right Ventricle	heart
14	chr1:180883000-180894800	Weak transcription	Colonic Mucosa	Colon
15	chr1:180883200-180892200	Weak transcription	Right Atrium	heart
16	chr1:180883200-180894200	Weak transcription	Brain Angular Gyrus	brain
17	chr1:180883400-180887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:180883400-180892600	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:180883600-180887200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:180883600-180887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:180883600-180888600	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:180883600-180891800	Weak transcription	HSMM	muscle
23	chr1:180883600-180892000	Weak transcription	Fetal Heart	heart
24	chr1:180883600-180892200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:180883600-180894200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:180883600-180894200	Weak transcription	Fetal Lung	lung
27	chr1:180883600-180894800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:180883600-180895000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr1:180885000-180887200	Strong transcription	Ovary	ovary
30	chr1:180885200-180887400	Weak transcription	K562	blood
31	chr1:180885200-180891000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:180885400-180887600	Strong transcription	Osteobl	bone
33	chr1:180885400-180888200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:180885400-180889600	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr1:180885400-180891200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:180885600-180887200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:180885600-180887800	Strong transcription	Adipose Nuclei	Adipose
38	chr1:180885600-180887800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:180885600-180888200	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr1:180885600-180888400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:180885600-180888400	Strong transcription	Aorta	Aorta
42	chr1:180885600-180889600	Strong transcription	Fetal Intestine Small	intestine
43	chr1:180885800-180887600	Strong transcription	Lung	lung
44	chr1:180885800-180887800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:180885800-180889600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:180885800-180895000	Weak transcription	NHLF	lung
47	chr1:180886000-180887800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:180886000-180887800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:180886000-180887800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:180886000-180888400	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links