Variant report

Variant	rs3763873
Chromosome Location	chr11:9550673-9550674
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9550112..9552481-chr11:9594913..9596804,2	K562	blood:
2	chr11:9544636..9547290-chr11:9550196..9552980,2	K562	blood:
3	chr11:9549118..9551478-chr11:9570161..9571670,2	K562	blood:
4	chr11:9548940..9552769-chr11:9586407..9589954,6	MCF-7	breast:
5	chr11:9548599..9552302-chr11:9610096..9614093,4	K562	blood:
6	chr11:9550259..9552287-chr11:9684576..9687124,2	MCF-7	breast:
7	chr11:9481456..9483921-chr11:9548991..9551405,2	K562	blood:
8	chr11:9550259..9553175-chr11:9607323..9609832,2	K562	blood:
9	chr11:9545790..9547606-chr11:9550508..9552980,2	K562	blood:
10	chr11:9484087..9486819-chr11:9549318..9550945,2	K562	blood:
11	chr11:9549975..9559413-chr11:9590114..9600515,26	MCF-7	breast:
12	chr11:9549697..9552302-chr11:9612422..9614093,2	K562	blood:
13	chr11:9547770..9558262-chr11:9588302..9599721,48	MCF-7	breast:
14	chr11:9549821..9553673-chr11:9553881..9558124,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000238387	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000133789	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1020621	0.92[CEU][hapmap]
rs10770037	0.85[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs10840243	0.96[CEU][hapmap];0.89[GIH][hapmap]
rs10840249	0.87[EUR][1000 genomes]
rs10840252	0.81[ASN][1000 genomes]
rs10840253	0.82[ASN][1000 genomes]
rs11042350	0.87[CEU][hapmap];0.86[GIH][hapmap]
rs11042366	0.92[CEU][hapmap];0.89[GIH][hapmap]
rs1470895	0.85[EUR][1000 genomes]
rs1470896	0.89[EUR][1000 genomes]
rs1968717	0.81[EUR][1000 genomes]
rs2290423	0.92[CEU][hapmap];0.86[GIH][hapmap]
rs3763877	0.89[EUR][1000 genomes]
rs4910468	0.91[EUR][1000 genomes]
rs7122252	0.92[CEU][hapmap];0.86[GIH][hapmap]
rs727405	0.92[CEU][hapmap];0.98[GIH][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs7926589	0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs7927350	0.92[CEU][hapmap];0.86[GIH][hapmap]
rs7939724	0.85[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs7944578	0.92[CEU][hapmap];0.86[GIH][hapmap]
rs8785	0.92[CEU][hapmap];0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3763873	IPO7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:9523400-9550800	Weak transcription	Colonic Mucosa	Colon
3	chr11:9523400-9551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:9529200-9550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:9530200-9551000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:9531000-9550800	Weak transcription	Pancreas	Pancrea
7	chr11:9534600-9556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:9535200-9551200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:9535400-9550800	Weak transcription	Brain Anterior Caudate	brain
10	chr11:9535800-9550800	Weak transcription	Esophagus	oesophagus
11	chr11:9535800-9554800	Weak transcription	Ovary	ovary
12	chr11:9536200-9552400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:9536400-9554800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:9537400-9551200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:9538000-9550800	Weak transcription	Right Ventricle	heart
16	chr11:9538200-9550800	Weak transcription	Brain Substantia Nigra	brain
17	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
18	chr11:9539000-9550800	Weak transcription	Brain Germinal Matrix	brain
19	chr11:9539800-9551000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:9539800-9551000	Weak transcription	Dnd41	blood
21	chr11:9541000-9550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:9541200-9551800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:9545000-9555000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:9546000-9550800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:9546200-9551400	Strong transcription	Primary T cells from cord blood	blood
26	chr11:9546400-9550800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:9546600-9550800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:9546800-9551000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:9547200-9550800	Weak transcription	Psoas Muscle	Psoas
30	chr11:9547400-9550800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:9547400-9556400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:9547600-9550800	Weak transcription	Left Ventricle	heart
33	chr11:9547600-9551200	Weak transcription	Gastric	stomach
34	chr11:9547600-9551200	Weak transcription	Lung	lung
35	chr11:9547600-9551800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:9547800-9557000	Weak transcription	Spleen	Spleen
38	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:9548000-9552000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:9548200-9550800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:9548200-9554800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:9548400-9550800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:9548400-9551400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:9548600-9551000	Enhancers	NH-A	brain
45	chr11:9548600-9551400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:9548600-9551800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr11:9548600-9551800	Enhancers	NHLF	lung
48	chr11:9548600-9552000	Enhancers	Rectal Smooth Muscle	rectum
49	chr11:9548600-9552000	Enhancers	HSMM	muscle
50	chr11:9548600-9552400	Enhancers	Fetal Intestine Small	intestine

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