Variant report

Variant	rs376388277
Chromosome Location	chr1:180747155-180747156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv3777	chr1:180741213-180780313	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv548346	chr1:180747033-180755321	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180715400-180747600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:180722600-180751000	Weak transcription	Left Ventricle	heart
4	chr1:180738000-180751200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:180740200-180751000	Weak transcription	Fetal Brain Female	brain
6	chr1:180740200-180753000	Weak transcription	Small Intestine	intestine
7	chr1:180740200-180761000	Weak transcription	Psoas Muscle	Psoas
8	chr1:180740800-180775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:180741000-180757200	Weak transcription	Primary B cells from cord blood	blood
10	chr1:180741600-180784000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:180743400-180757200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:180743400-180763000	Weak transcription	HSMM	muscle
13	chr1:180744000-180757200	Weak transcription	Primary T cells from cord blood	blood
14	chr1:180744400-180751000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:180746600-180748400	Enhancers	Liver	Liver
16	chr1:180746600-180751400	Weak transcription	Fetal Brain Male	brain
17	chr1:180747000-180756800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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