Variant report

Variant	rs3764073
Chromosome Location	chr13:40179199-40179200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12853787	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1548273	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17060288	1.00[JPT][hapmap]
rs17060594	1.00[AMR][1000 genomes]
rs2324348	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs56213801	0.90[EUR][1000 genomes]
rs61432896	0.90[EUR][1000 genomes]
rs7317222	0.86[JPT][hapmap]
rs7334762	0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs74046534	0.90[EUR][1000 genomes]
rs74046537	0.90[EUR][1000 genomes]
rs74046538	0.90[EUR][1000 genomes]
rs74046541	0.90[EUR][1000 genomes]
rs7985820	0.86[JPT][hapmap]
rs9532392	0.86[JPT][hapmap]
rs9566451	0.82[EUR][1000 genomes]
rs9603596	1.00[AMR][1000 genomes]
rs9603598	1.00[AMR][1000 genomes]
rs9603601	1.00[AMR][1000 genomes]
rs9603609	1.00[AMR][1000 genomes]
rs9652259	1.00[AMR][1000 genomes]
rs978136	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40178200-40185200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:40178800-40179200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:40178800-40179200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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