Variant report

Variant	rs376409508
Chromosome Location	chr11:87164029-87164030
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:87156400-87165000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:87156800-87164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:87157000-87165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:87157800-87164600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:87162800-87164600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:87162800-87164800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:87162800-87164800	Weak transcription	Fetal Kidney	kidney
9	chr11:87163000-87164400	Weak transcription	HSMMtube	muscle
10	chr11:87163000-87164800	Weak transcription	NHDF-Ad	bronchial
11	chr11:87163000-87165000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:87163200-87165000	Weak transcription	Osteobl	bone
13	chr11:87163400-87164600	Weak transcription	HSMM	muscle
14	chr11:87164000-87165400	Enhancers	Psoas Muscle	Psoas
15	chr11:87164000-87165800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links