Variant report

Variant	rs376427429
Chromosome Location	chr10:52417701-52417702
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52414539..52416441-chr10:52417401..52419945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231345	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv948007	chr10:52414948-52500270	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv3356446	chr10:52415371-52417919	Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv8662	chr10:52416662-52461079	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52411200-52419200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:52413600-52419200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:52413600-52419600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:52413600-52419600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:52413800-52418400	Weak transcription	Fetal Thymus	thymus
6	chr10:52413800-52418600	Weak transcription	Fetal Intestine Large	intestine
7	chr10:52413800-52419200	Weak transcription	Thymus	Thymus
8	chr10:52414000-52419000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:52414000-52419200	Weak transcription	Primary B cells from cord blood	blood
10	chr10:52414000-52419600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:52414000-52419600	Weak transcription	Primary T cells from cord blood	blood
12	chr10:52414000-52419800	Weak transcription	HUVEC	blood vessel
13	chr10:52414200-52419200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr10:52414400-52419200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:52414400-52419600	Weak transcription	Placenta	Placenta
16	chr10:52414600-52418000	Weak transcription	GM12878-XiMat	blood
17	chr10:52414600-52419600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:52416400-52418000	Weak transcription	Fetal Stomach	stomach
19	chr10:52417400-52419000	Weak transcription	Right Atrium	heart
20	chr10:52417400-52419400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:52417600-52418800	Weak transcription	Liver	Liver
22	chr10:52417600-52420200	Active TSS	K562	blood

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