Variant report

Variant	rs3764821
Chromosome Location	chr11:67778326-67778327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:150)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:150 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:67778320-67778470	AG09319	gingival:	n/a	n/a
2	TCF7L2	chr11:67777546-67778596	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr11:67777527-67778367	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr11:67776841-67779086	A549	lung:	n/a	n/a
5	RAD21	chr11:67777037-67778612	Hela-S3	cervix:	n/a	n/a
6	ZBTB7A	chr11:67777369-67778457	ECC-1	luminal epithelium:	n/a	n/a
7	MAX	chr11:67777077-67778668	Hela-S3	cervix:	n/a	n/a
8	GTF2F1	chr11:67777105-67778629	Hela-S3	cervix:	n/a	n/a
9	HEY1	chr11:67778127-67778419	HepG2	liver:	n/a	n/a
10	TEAD4	chr11:67777408-67778342	ECC-1	luminal epithelium:	n/a	n/a
11	ZBTB7A	chr11:67777427-67778447	ECC-1	luminal epithelium:	n/a	n/a
12	CEBPD	chr11:67778074-67778442	HepG2	liver:	n/a	n/a
13	MXI1	chr11:67777179-67779016	IMR90	lung:	n/a	n/a
14	NR3C1	chr11:67777452-67778533	A549	lung:	n/a	n/a
15	POLR2A	chr11:67777098-67778638	HCT-116	colon:	n/a	n/a
16	TAF1	chr11:67777499-67778496	Hela-S3	cervix:	n/a	n/a
17	ZBTB33	chr11:67777415-67778432	A549	lung:	n/a	n/a
18	FOXA2	chr11:67777373-67778502	A549	lung:	n/a	n/a
19	POLR2A	chr11:67777416-67778603	A549	lung:	n/a	n/a
20	MXI1	chr11:67777442-67778551	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr11:67777053-67778982	HL-60	blood:	n/a	n/a
22	POLR2A	chr11:67778145-67778354	HepG2	liver:	n/a	n/a
23	CTCF	chr11:67778200-67778350	HVMF	connective:	n/a	n/a
24	CTCF	chr11:67778280-67778430	BJ	skin:	n/a	n/a
25	CTCF	chr11:67778260-67778410	HRPEpiC	eye:	n/a	n/a
26	YY1	chr11:67777888-67778800	ECC-1	luminal epithelium:	n/a	n/a
27	REST	chr11:67777440-67778650	A549	lung:	n/a	n/a
28	SIN3AK20	chr11:67777500-67778466	A549	lung:	n/a	n/a
29	EP300	chr11:67776703-67779274	A549	lung:	n/a	n/a
30	POLR2A	chr11:67778120-67778442	SK-N-SH	brain:	n/a	n/a
31	CEBPB	chr11:67777157-67778573	Hela-S3	cervix:	n/a	chr11:67777683-67777694
32	POLR2A	chr11:67777424-67778871	HepG2	liver:	n/a	n/a
33	TAF1	chr11:67777460-67778437	ECC-1	luminal epithelium:	n/a	n/a
34	CTCF	chr11:67778300-67778450	HA-sp	spinal cord:	n/a	n/a
35	NFIC	chr11:67777290-67778505	SK-N-SH	brain:	n/a	n/a
36	TAF1	chr11:67777598-67778334	HepG2	liver:	n/a	n/a
37	E2F4	chr11:67778293-67778528	MCF10A-Er-Src	breast:	n/a	n/a
38	POLR2A	chr11:67777218-67783087	Hela-S3	cervix:	n/a	n/a
39	ATF3	chr11:67777103-67778538	A549	lung:	n/a	n/a
40	NR3C1	chr11:67777450-67778540	A549	lung:	n/a	n/a
41	POLR2A	chr11:67777291-67783079	U87	brain:	n/a	n/a
42	CHD2	chr11:67777487-67778532	Hela-S3	cervix:	n/a	n/a
43	SP1	chr11:67776718-67782739	A549	lung:	n/a	chr11:67782714-67782728 chr11:67782346-67782355 chr11:67782347-67782356 chr11:67782346-67782360
44	FOSL2	chr11:67777466-67778461	A549	lung:	n/a	n/a
45	POLR2A	chr11:67778175-67778341	HepG2	liver:	n/a	n/a
46	POLR2A	chr11:67777338-67779674	U87	brain:	n/a	n/a
47	BRCA1	chr11:67777072-67778731	Hela-S3	cervix:	n/a	n/a
48	MAX	chr11:67777404-67778654	ECC-1	luminal epithelium:	n/a	n/a
49	BCL3	chr11:67777390-67783349	A549	lung:	n/a	chr11:67782268-67782277
50	STAT3	chr11:67778140-67778608	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67778253..67781107-chr11:67810420..67812608,2	K562	blood:
2	chr11:67777632..67778413-chr12:56842682..56843527,3	Hela-S3	cervix:
3	chr11:67777444..67778431-chr14:65453288..65454088,2	Hela-S3	cervix:
4	chr11:67777733..67778469-chr7:25164455..25165345,2	Hela-S3	cervix:
5	chr11:67777900..67778811-chr16:15188045..15188733,2	Hela-S3	cervix:
6	chr11:67777934..67778464-chr17:56708221..56708843,2	Hela-S3	cervix:
7	chr11:67776633..67779501-chr11:67798153..67800329,2	K562	blood:
8	chr11:67778033..67778757-chr7:66205095..66205707,2	Hela-S3	cervix:
9	chr11:67777484..67778360-chr5:271623..272155,2	Hela-S3	cervix:
10	chr11:67770463..67774040-chr11:67774088..67778740,6	K562	blood:
11	chr11:67770112..67773137-chr11:67777240..67779852,3	K562	blood:
12	chr11:67777507..67778379-chr16:57496418..57497191,2	Hela-S3	cervix:
13	chr11:67777523..67778410-chr6:36562073..36562583,2	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UNC93B1-1	chr11:67776909-67782033	NONHSAT022487

No data

Variant related genes	Relation type
ALDH3B1	TF binding region
ENSG00000172115	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000248925	Chromatin interaction
ENSG00000243335	Chromatin interaction
ENSG00000085721	Chromatin interaction
ENSG00000110719	Chromatin interaction
ENSG00000110717	Chromatin interaction
ENSG00000249915	Chromatin interaction
ENSG00000260735	Chromatin interaction
ENSG00000272831	Chromatin interaction
ENSG00000111602	Chromatin interaction
ENSG00000110057	Chromatin interaction
ENSG00000102978	Chromatin interaction
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1003777	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1122731	0.93[CEU][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12277180	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12284146	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs15518	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2075626	0.93[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2286163	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2286164	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2286165	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2286166	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2286168	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2286169	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3115547	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3133268	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3751084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3764816	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3764817	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3764819	0.93[CHB][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3794177	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4147777	0.93[CEU][hapmap]
rs4244839	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646808	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646812	0.94[EUR][1000 genomes]
rs4646813	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72926415	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7952122	0.85[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs886701	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs886702	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs999571	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
3	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
6	esv2757450	chr11:67472905-67891289	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
7	esv2759835	chr11:67472905-67891289	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
8	nsv428260	chr11:67524937-67797669	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
9	esv2758275	chr11:67524937-67859490	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
10	nsv469856	chr11:67639037-67859490	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
11	nsv482760	chr11:67639037-67859490	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
12	nsv1038960	chr11:67727827-67785555	Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
13	nsv1047567	chr11:67747160-67819790	Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
14	nsv8836	chr11:67752879-67819799	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
15	nsv983037	chr11:67756642-67778389	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
16	nsv897836	chr11:67757350-67816936	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
17	nsv897837	chr11:67757350-67821036	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
18	nsv897838	chr11:67757350-67833543	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
19	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
20	nsv1050471	chr11:67764068-67821610	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv897839	chr11:67765056-67793014	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
22	nsv468613	chr11:67765056-67794643	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
23	nsv555277	chr11:67765056-67794643	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
24	nsv468614	chr11:67765056-67799926	ZNF genes & repeats Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
25	nsv897840	chr11:67765056-67804605	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
26	nsv468615	chr11:67765056-67816936	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
27	nsv555278	chr11:67765056-67816936	Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
28	nsv897841	chr11:67765056-67816936	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
29	nsv469964	chr11:67765056-67821036	Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
30	nsv897842	chr11:67765056-67821036	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
31	nsv897843	chr11:67765056-67833543	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
32	nsv1046054	chr11:67768796-67819790	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
33	nsv897844	chr11:67772729-67793014	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
34	nsv897845	chr11:67774231-67821036	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
35	nsv897846	chr11:67776465-67794643	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
36	nsv897847	chr11:67776465-67804605	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs3764821	KCNK4	cis	cerebellum	SCAN
rs3764821	SPDYC	cis	parietal	SCAN
rs3764821	NDUFS8	cis	multi-tissue	Pritchard
rs3764821	NDUFS8	Cis_1M	lymphoblastoid	RTeQTL
rs3764821	NDUFS8	cis	parietal	SCAN
rs3764821	ALDH3B1	cis	multi-tissue	Pritchard

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67771600-67797600	Weak transcription	Small Intestine	intestine
2	chr11:67772200-67779200	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:67772600-67792400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:67775000-67782400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:67775600-67779400	Enhancers	Fetal Heart	heart
6	chr11:67776000-67778800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:67776000-67778800	Enhancers	NHEK	skin
8	chr11:67776400-67778400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:67776400-67778600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:67776400-67779400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:67776800-67780200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:67777000-67778800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:67777200-67778400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:67777200-67778400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:67777200-67778600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:67777200-67778600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:67777200-67778800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:67777200-67778800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:67777200-67779000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:67777200-67779000	Enhancers	Fetal Stomach	stomach
21	chr11:67777400-67778400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:67777400-67778400	Flanking Active TSS	Colonic Mucosa	Colon
23	chr11:67777400-67778400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr11:67777400-67778400	Active TSS	Hela-S3	cervix
25	chr11:67777400-67778600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:67777400-67778600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:67777400-67778600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:67777400-67778600	Flanking Active TSS	Placenta	Placenta
29	chr11:67777400-67778600	Active TSS	A549	lung
30	chr11:67777400-67778800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr11:67777400-67778800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:67777400-67778800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:67777400-67778800	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr11:67777400-67778800	Flanking Active TSS	Fetal Intestine Small	intestine
35	chr11:67777400-67778800	Flanking Active TSS	HMEC	breast
36	chr11:67777400-67779000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:67777400-67779000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr11:67777400-67779000	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr11:67777400-67779400	Flanking Active TSS	Osteobl	bone
40	chr11:67777400-67780400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr11:67777400-67782600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr11:67777600-67778400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:67777600-67778400	Flanking Active TSS	Esophagus	oesophagus
44	chr11:67777600-67778400	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr11:67777600-67778400	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:67777600-67778400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr11:67777600-67778600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:67777600-67778600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:67777600-67778600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr11:67777600-67778600	Flanking Active TSS	Primary B cells from cord blood	blood

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