Variant report

Variant	rs376484921
Chromosome Location	chrY:20826983-20826984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869477	chrY:20063342-20961810	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv2758602	chrY:20674826-21005064	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2758907	chrY:20674826-21005064	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv915569	chrY:20707618-21649354	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv10023	chrY:20783788-20860381	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region	4 gene(s)	inside rSNPs	diseases
6	nsv497825	chrY:20826182-21640237	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv533955	chrY:20826207-21640200	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:20826800-20828200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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