Variant report

Variant	rs376495746
Chromosome Location	chr9:43123375-43123376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr9:43123304-43123512	HepG2	liver:	n/a	n/a
2	IRF4	chr9:43122298-43123758	GM12878	blood:	n/a	n/a
3	BCL11A	chr9:43123263-43123707	GM12878	blood:	n/a	n/a
4	SP1	chr9:43123051-43124016	GM12878	blood:	n/a	n/a
5	GABPA	chr9:43123263-43123580	Hela-S3	cervix:	n/a	n/a
6	TCF12	chr9:43123359-43123606	GM12878	blood:	n/a	n/a
7	BATF	chr9:43122109-43123723	GM12878	blood:	n/a	n/a
8	FOXA1	chr9:43122972-43123791	HepG2	liver:	n/a	n/a
9	RXRA	chr9:43123092-43123658	HepG2	liver:	n/a	n/a
10	PAX5	chr9:43122212-43123797	GM12878	blood:	n/a	chr9:43122563-43122572
11	BATF	chr9:43123059-43123716	GM12878	blood:	n/a	n/a
12	JUND	chr9:43123283-43123699	HepG2	liver:	n/a	n/a
13	FOSL2	chr9:43122329-43123756	HepG2	liver:	n/a	chr9:43122934-43122941 chr9:43122933-43122941 chr9:43122431-43122445
14	POU2F2	chr9:43122241-43123764	GM12878	blood:	n/a	chr9:43122922-43122935 chr9:43122920-43122934
15	BCL11A	chr9:43123313-43123640	GM12878	blood:	n/a	n/a
16	EBF1	chr9:43123304-43123615	GM12878	blood:	n/a	n/a
17	ZBTB33	chr9:43123126-43123667	GM12878	blood:	n/a	n/a
18	RXRA	chr9:43122657-43123611	HepG2	liver:	n/a	chr9:43122932-43122941
19	FOSL2	chr9:43123029-43123756	HepG2	liver:	n/a	n/a
20	SP1	chr9:43122878-43123781	HepG2	liver:	n/a	n/a
21	ZBTB33	chr9:43123175-43123576	GM12878	blood:	n/a	n/a
22	PAX5	chr9:43123347-43123543	GM12878	blood:	n/a	n/a
23	TCF12	chr9:43123280-43123581	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RNU6-538P	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826083	chr9:42228512-43187726	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv1822891	chr9:42316318-43198208	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv982243	chr9:42995364-43160734	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv893173	chr9:43034822-43998470	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv1829975	chr9:43045290-43831337	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1032639	chr9:43064834-43701826	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1025182	chr9:43064834-43705240	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv1027611	chr9:43064834-43747241	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv1027107	chr9:43064834-43776906	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv1034498	chr9:43064834-43780897	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv1019827	chr9:43064834-43790334	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv1030625	chr9:43064834-43800174	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
13	esv3367902	chr9:43117656-43125554	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv973267	chr9:43119485-43125419	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv973268	chr9:43119485-43128075	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links