Variant report

Variant	rs3765088
Chromosome Location	chr11:67399970-67399971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:67393312-67402949	H1-hESC	embryonic stem cell:	n/a	n/a
2	ZBTB7A	chr11:67399727-67400162	HepG2	liver:	n/a	n/a
3	POLR2A	chr11:67399466-67400525	K562	blood:	n/a	n/a
4	MXI1	chr11:67399806-67400336	HepG2	liver:	n/a	n/a
5	NFIC	chr11:67399689-67400475	HepG2	liver:	n/a	n/a
6	HNF4A	chr11:67399452-67400277	HepG2	liver:	n/a	chr11:67400042-67400064 chr11:67400046-67400059 chr11:67400147-67400161 chr11:67400046-67400059 chr11:67400048-67400070 chr11:67400047-67400059
7	CHD2	chr11:67399798-67400251	HepG2	liver:	n/a	chr11:67399904-67399914
8	TEAD4	chr11:67399805-67400382	HepG2	liver:	n/a	n/a
9	RCOR1	chr11:67399802-67400547	HepG2	liver:	n/a	n/a
10	ARID3A	chr11:67399875-67400077	HepG2	liver:	n/a	n/a
11	MYBL2	chr11:67399653-67400527	HepG2	liver:	n/a	n/a
12	HNF4A	chr11:67399562-67400426	HepG2	liver:	n/a	chr11:67400042-67400064 chr11:67400046-67400059 chr11:67400147-67400161 chr11:67400046-67400059 chr11:67400048-67400070 chr11:67400047-67400059
13	SP1	chr11:67399535-67400414	HepG2	liver:	n/a	chr11:67399899-67399912 chr11:67399905-67399914 chr11:67399904-67399916
14	MAZ	chr11:67399846-67400340	HepG2	liver:	n/a	n/a
15	FOXA1	chr11:67399473-67400339	HepG2	liver:	n/a	n/a
16	MBD4	chr11:67399800-67400291	HepG2	liver:	n/a	n/a
17	ZBTB7A	chr11:67399928-67400095	K562	blood:	n/a	n/a
18	TBP	chr11:67399788-67400338	HepG2	liver:	n/a	n/a
19	HEY1	chr11:67399636-67399977	HepG2	liver:	n/a	n/a
20	MYBL2	chr11:67399457-67400445	HepG2	liver:	n/a	n/a
21	FOXA2	chr11:67399493-67400130	HepG2	liver:	n/a	n/a
22	POLR2A	chr11:67395514-67400247	HepG2	liver:	n/a	n/a
23	HDAC2	chr11:67399756-67400609	HepG2	liver:	n/a	n/a
24	POLR2A	chr11:67399538-67400869	H1-hESC	embryonic stem cell:	n/a	n/a
25	NR2F2	chr11:67397786-67400792	HepG2	liver:	n/a	n/a
26	HNF4G	chr11:67399694-67400354	HepG2	liver:	n/a	chr11:67400042-67400064 chr11:67400046-67400059 chr11:67400147-67400161 chr11:67400046-67400059 chr11:67400048-67400070 chr11:67400047-67400059
27	RXRA	chr11:67399748-67400310	HepG2	liver:	n/a	n/a
28	POLR2A	chr11:67397748-67401958	H1-hESC	embryonic stem cell:	n/a	n/a
29	TCF12	chr11:67399763-67400282	HepG2	liver:	n/a	n/a
30	HDAC2	chr11:67399651-67400304	HepG2	liver:	n/a	n/a
31	NR2F2	chr11:67399541-67400404	HepG2	liver:	n/a	n/a
32	POLR2A	chr11:67394290-67400134	K562	blood:	n/a	n/a
33	HNF4G	chr11:67399702-67400371	HepG2	liver:	n/a	chr11:67400042-67400064 chr11:67400046-67400059 chr11:67400147-67400161 chr11:67400046-67400059 chr11:67400048-67400070 chr11:67400047-67400059
34	NFIC	chr11:67399516-67400404	HepG2	liver:	n/a	n/a
35	ZBTB7A	chr11:67399783-67400229	HepG2	liver:	n/a	n/a
36	HNF4A	chr11:67399688-67400322	HepG2	liver:	n/a	chr11:67400042-67400064 chr11:67400046-67400059 chr11:67400147-67400161 chr11:67400046-67400059 chr11:67400048-67400070 chr11:67400047-67400059
37	RXRA	chr11:67399666-67400441	HepG2	liver:	n/a	n/a
38	EP300	chr11:67399704-67400366	HepG2	liver:	n/a	n/a
39	CEBPD	chr11:67399594-67400138	HepG2	liver:	n/a	n/a
40	POLR2A	chr11:67397726-67401067	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr11:67399485-67400160	HepG2	liver:	n/a	n/a
42	YY1	chr11:67399620-67400440	HepG2	liver:	n/a	n/a
43	RFX5	chr11:67399891-67400409	HepG2	liver:	n/a	n/a
44	POLR2A	chr11:67397789-67401094	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:67397976..67400551-chr11:67412070..67415515,3	MCF-7	breast:
2	chr11:67372725..67386378-chr11:67392399..67400639,29	K562	blood:
3	chr11:67397074..67400069-chr11:67440700..67443508,2	K562	blood:
4	chr11:67380957..67389846-chr11:67394173..67403228,21	K562	blood:
5	chr11:67396543..67400484-chr11:67414425..67419634,5	MCF-7	breast:
6	chr11:67344360..67352769-chr11:67395394..67400721,12	K562	blood:
7	chr11:67397074..67400069-chr11:67440700..67443508,3	K562	blood:
8	chr11:67395852..67400432-chr11:67404620..67408941,6	K562	blood:
9	chr11:67377022..67387637-chr11:67394926..67400114,17	MCF-7	breast:
10	chr11:67397789..67400149-chr11:67805854..67808193,2	MCF-7	breast:
11	chr11:67370584..67375680-chr11:67395595..67400853,11	MCF-7	breast:

Variant related genes	Relation type
NUDT8	TF binding region
ENSG00000132746	Chromatin interaction
ENSG00000132744	Chromatin interaction
ENSG00000231793	Chromatin interaction
ENSG00000184224	Chromatin interaction
ENSG00000110719	Chromatin interaction
ENSG00000084207	Chromatin interaction
ENSG00000255119	Chromatin interaction
ENSG00000167792	Chromatin interaction
ENSG00000167800	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10791908	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896185	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896186	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896190	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11227862	0.92[EUR][1000 genomes]
rs11227866	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11603991	0.88[CEU][hapmap]
rs12421329	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs12790798	0.88[CEU][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs12793832	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs1531514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695	0.81[CEU][hapmap]
rs1871042	0.81[CEU][hapmap]
rs1871043	0.88[CEU][hapmap]
rs2126717	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2126718	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2126719	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2187002	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2447595	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2447596	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2509709	0.85[EUR][1000 genomes]
rs2514017	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2514022	0.84[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs4024254	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs4147581	0.88[CHB][hapmap]
rs4148959	0.88[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs4148960	0.92[EUR][1000 genomes]
rs4891	0.80[CEU][hapmap]
rs4930210	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs56092845	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs596603	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs611663	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs614080	0.88[CHB][hapmap];0.85[CHD][hapmap];0.84[MKK][hapmap]
rs61894496	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625978	0.88[CHB][hapmap]
rs640777	0.86[EUR][1000 genomes]
rs656652	0.88[CHB][hapmap]
rs7103632	0.88[CEU][hapmap]
rs7130679	0.91[EUR][1000 genomes]
rs749174	0.81[CEU][hapmap]
rs7948073	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs947895	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
4	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
5	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
6	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
7	nsv1041988	chr11:67319916-67749246	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	nsv897814	chr11:67339949-67460529	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv1050463	chr11:67343421-67717338	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
10	nsv1038189	chr11:67345320-67749246	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1047236	chr11:67345320-67764068	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
12	nsv555268	chr11:67346743-67752972	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
13	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
14	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
15	nsv897815	chr11:67347595-67408791	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1053811	chr11:67349444-67749246	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
17	esv1817852	chr11:67349899-67626567	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
18	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
19	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
20	nsv897816	chr11:67353579-67460529	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
21	nsv1041887	chr11:67357365-67464893	Flanking Active TSS Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
22	nsv541080	chr11:67357365-67464893	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
23	nsv529452	chr11:67358204-67465721	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
24	nsv492253	chr11:67358204-67574402	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
25	nsv1043487	chr11:67360899-67662476	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
26	nsv897817	chr11:67372477-67414492	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
27	nsv897818	chr11:67372477-67419855	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
28	nsv468607	chr11:67372477-67423892	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
29	nsv555270	chr11:67372477-67423892	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
30	nsv897819	chr11:67372477-67426797	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
31	nsv468608	chr11:67372477-67433869	Genic enhancers Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
32	nsv555271	chr11:67372477-67433869	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
33	nsv897820	chr11:67372477-67460529	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
34	nsv897821	chr11:67378594-67430762	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
35	nsv897822	chr11:67378594-67441553	Genic enhancers Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
36	nsv897823	chr11:67378594-67460529	Enhancers Bivalent Enhancer Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
37	nsv897824	chr11:67379575-67418202	Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	40 gene(s)	inside rSNPs	diseases
38	nsv897825	chr11:67381110-67460529	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
39	nsv555272	chr11:67394895-67408241	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases
40	nsv468609	chr11:67395714-67433869	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
41	nsv555273	chr11:67395714-67433869	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
42	nsv469963	chr11:67395714-67438195	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs3765088	PC	cis	cerebellum	SCAN
rs3765088	GSTP1	cis	cerebellum	SCAN
rs3765088	GSTP1	cis	lymphoblastoid	seeQTL
rs3765088	RPS6KB2	cis	lymphoblastoid	seeQTL
rs3765088	FOSL1	cis	parietal	SCAN
rs3765088	DOC2GP	cis	Artery Tibial	GTEx
rs3765088	NDUFV1	cis	Thyroid	GTEx
rs3765088	NUDT8	cis	Artery Tibial	GTEx
rs3765088	NPAS4	cis	cerebellum	SCAN
rs3765088	RP11-655M14.12	cis	Muscle Skeletal	GTEx
rs3765088	RTN3	cis	parietal	SCAN
rs3765088	ATG2A	cis	parietal	SCAN
rs3765088	DOC2GP	cis	Skin Sun Exposed Lower leg	GTEx
rs3765088	SLC29A2	cis	parietal	SCAN
rs3765088	NUDT8	cis	Heart Left Ventricle	GTEx
rs3765088	NDUFV1	cis	cerebellum	SCAN
rs3765088	GSTP1	cis	parietal	SCAN
rs3765088	NDUFV1	cis	parietal	SCAN
rs3765088	RPS6KB2	cis	multi-tissue	Pritchard
rs3765088	RP11-655M14.13	cis	Esophagus Muscularis	GTEx

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67398200-67400800	Flanking Active TSS	HepG2	liver
2	chr11:67398600-67400000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:67398600-67400000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:67398600-67400800	Enhancers	Right Ventricle	heart
5	chr11:67398600-67401000	Enhancers	Pancreas	Pancrea
6	chr11:67398600-67401400	Enhancers	Liver	Liver
7	chr11:67398600-67401800	Enhancers	Gastric	stomach
8	chr11:67398600-67402000	Enhancers	Stomach Mucosa	stomach
9	chr11:67398600-67403200	Enhancers	Fetal Intestine Large	intestine
10	chr11:67398600-67403200	Enhancers	Fetal Intestine Small	intestine
11	chr11:67398800-67400000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:67398800-67400000	Weak transcription	Left Ventricle	heart
13	chr11:67398800-67400200	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:67398800-67400400	Weak transcription	Small Intestine	intestine
15	chr11:67398800-67400600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:67398800-67400800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:67398800-67401200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:67398800-67402800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr11:67398800-67404400	Weak transcription	GM12878-XiMat	blood
20	chr11:67398800-67418600	Weak transcription	Right Atrium	heart
21	chr11:67399000-67400200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:67399000-67400200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:67399000-67400400	Enhancers	Dnd41	blood
24	chr11:67399000-67400800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:67399000-67401000	Enhancers	Colonic Mucosa	Colon
26	chr11:67399400-67400400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:67399400-67400600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:67399400-67401200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr11:67399400-67402000	Enhancers	Duodenum Mucosa	Duodenum
30	chr11:67399600-67402000	Weak transcription	Placenta	Placenta
31	chr11:67399600-67407200	Weak transcription	Spleen	Spleen
32	chr11:67399800-67400000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:67399800-67400600	Enhancers	Fetal Heart	heart
34	chr11:67399800-67407000	Weak transcription	K562	blood

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