Variant report

Variant	rs376517186
Chromosome Location	chr4:106394607-106394608
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:106394178..106395006-chrX:12993425..12994167,2	Hela-S3	cervix:
2	chr4:106393178..106395974-chr4:106403458..106406397,4	K562	blood:
3	chr1:28969282..28969891-chr4:106394460..106395081,2	Hela-S3	cervix:
4	chr16:30389015..30389773-chr4:106394499..106395109,2	NB4	blood:
5	chr4:106319989..106322033-chr4:106394167..106395857,2	K562	blood:
6	chr4:106066586..106070319-chr4:106392729..106397085,7	MCF-7	breast:
7	chr4:105817842..105820618-chr4:106392954..106394791,2	MCF-7	breast:
8	chr4:106393672..106395391-chr4:106404396..106406000,2	MCF-7	breast:
9	chr4:106393678..106396634-chr4:106628055..106631625,3	K562	blood:
10	chr4:105893495..105895146-chr4:106393920..106395691,2	MCF-7	breast:
11	chr4:106393662..106395828-chr4:106816451..106818779,3	MCF-7	breast:
12	chr4:106066539..106069010-chr4:106392150..106395317,5	MCF-7	breast:
13	chr4:106393199..106396342-chr4:106628328..106631625,4	K562	blood:
14	chr4:106373864..106376614-chr4:106391989..106394662,2	MCF-7	breast:
15	chr4:106066580..106068131-chr4:106393738..106396130,2	K562	blood:
16	chr1:149223985..149224640-chr4:106394223..106395221,2	Hela-S3	cervix:
17	chr4:106046108..106050165-chr4:106391446..106394724,4	MCF-7	breast:
18	chr4:106064984..106068563-chr4:106391196..106395238,6	K562	blood:
19	chr3:73160092..73160604-chr4:106394372..106395020,2	Hela-S3	cervix:
20	chr4:106368037..106370559-chr4:106393297..106395424,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000205542	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000138777	Chromatin interaction
ENSG00000138785	Chromatin interaction
ENSG00000248373	Chromatin interaction
ENSG00000229388	Chromatin interaction
ENSG00000138780	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000168769	Chromatin interaction
ENSG00000249264	Chromatin interaction
ENSG00000168743	Chromatin interaction
ENSG00000120656	Chromatin interaction
ENSG00000180035	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3421073	chr4:106393528-106396476	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106392800-106395600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:106393000-106395400	Active TSS	Fetal Muscle Trunk	muscle
3	chr4:106393000-106395400	Active TSS	Right Atrium	heart
4	chr4:106393000-106395600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:106393400-106395400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:106393400-106395400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr4:106393400-106395400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:106393400-106395400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr4:106393400-106395600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:106393400-106395600	Active TSS	Right Ventricle	heart
11	chr4:106393600-106394800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:106393600-106395400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:106393600-106395400	Active TSS	Left Ventricle	heart
14	chr4:106393600-106395400	Active TSS	Stomach Mucosa	stomach
15	chr4:106393600-106395600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:106393600-106395600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:106393600-106395600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr4:106393600-106395600	Active TSS	Colon Smooth Muscle	Colon
19	chr4:106393600-106395600	Active TSS	Fetal Stomach	stomach
20	chr4:106393600-106395600	Active TSS	A549	lung
21	chr4:106393600-106395600	Active TSS	GM12878-XiMat	blood
22	chr4:106393600-106395800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:106393600-106395800	Active TSS	HMEC	breast
24	chr4:106393600-106395800	Active TSS	K562	blood
25	chr4:106393800-106395200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:106393800-106395400	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr4:106393800-106395400	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr4:106393800-106395400	Active TSS	Fetal Intestine Small	intestine
29	chr4:106393800-106395400	Active TSS	HepG2	liver
30	chr4:106393800-106395600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:106393800-106395600	Active TSS	Colonic Mucosa	Colon
32	chr4:106393800-106395600	Active TSS	Thymus	Thymus
33	chr4:106393800-106395600	Active TSS	HSMM	muscle
34	chr4:106393800-106395600	Active TSS	HSMMtube	muscle
35	chr4:106394000-106394800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:106394000-106395200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:106394000-106395200	Active TSS	Esophagus	oesophagus
38	chr4:106394000-106395200	Active TSS	Lung	lung
39	chr4:106394000-106395200	Active TSS	Sigmoid Colon	Sigmoid Colon
40	chr4:106394000-106395400	Active TSS	H1 Cell Line	embryonic stem cell
41	chr4:106394000-106395400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:106394000-106395400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:106394000-106395400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:106394000-106395400	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr4:106394000-106395400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:106394000-106395400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:106394000-106395400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:106394000-106395400	Active TSS	Muscle Satellite Cultured Cells	--
49	chr4:106394000-106395400	Active TSS	Brain Angular Gyrus	brain
50	chr4:106394000-106395400	Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links