Variant report

Variant	rs376534209
Chromosome Location	chr7:56670372-56670373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:56670372-56670422	SK-N-SH_RA	brain:	n/a
2	chr7:56670372-56670422	CMK	blood:	n/a
3	chr7:56670372-56670422	NB4	blood:	n/a
4	chr7:56670372-56670422	HPAEpiC	pulmonary alveolar:	n/a
5	chr7:56670372-56670422	U87	brain:	n/a
6	chr7:56670372-56670422	A549	lung:	n/a
7	chr7:56670372-56670422	RPTEC	kidney:	n/a
8	chr7:56670372-56670422	MCF-7	breast:	n/a
9	chr7:56670372-56670422	HepG2	liver:	n/a
10	chr7:56670372-56670422	SK-N-SH	brain:	n/a
11	chr7:56670372-56670422	GM06990	blood:	n/a
12	chr7:56670372-56670422	HRPEpiC	eye:	n/a
13	chr7:56670372-56670422	ovcar-3	ovarian:	n/a
14	chr7:56670372-56670422	GM19239	blood:	n/a
15	chr7:56670372-56670422	NH-A	brain:	n/a
16	chr7:56670372-56670422	BE2_C	brain:	n/a
17	chr7:56670372-56670422	NHDF-neo	bronchial:	n/a
18	chr7:56670372-56670422	ProgFib	skin:	n/a
19	chr7:56670372-56670422	GM12892	blood:	n/a
20	chr7:56670372-56670422	HCPEpiC	choroid plexus:	n/a
21	chr7:56670372-56670422	T-47D	breast:	n/a
22	chr7:56670372-56670422	AG09319	gingival:	n/a
23	chr7:56670372-56670422	HMEC	breast:	n/a
24	chr7:56670372-56670422	SKMC	muscle:	n/a
25	chr7:56670372-56670422	GM12891	blood:	n/a
26	chr7:56670372-56670422	Hela-S3	cervix:	n/a
27	chr7:56670372-56670422	HNPCEpiC	eye:	n/a
28	chr7:56670372-56670422	HAEpiC	amniotic membrane:	n/a
29	chr7:56670372-56670422	HL-60	blood:	n/a
30	chr7:56670372-56670422	AoSMC	blood vessel:	n/a
31	chr7:56670372-56670422	NHBE	bronchial:	n/a
32	chr7:56670372-56670422	BJ	skin:	n/a
33	chr7:56670372-56670422	AG04450	lung:	fetal
34	chr7:56670372-56670422	Caco-2	colon:	n/a
35	chr7:56670372-56670422	MCF10A-Er-Src	breast:	n/a
36	chr7:56670372-56670422	HCF	heart:	n/a
37	chr7:56670372-56670422	HCM	heart:	n/a
38	chr7:56670372-56670422	Hepatocyte	liver:	n/a
39	chr7:56670372-56670422	ECC-1	luminal epithelium:	n/a
40	chr7:56670372-56670422	HCT-116	colon:	n/a
41	chr7:56670372-56670422	HEEpiC	esophagus:	n/a
42	chr7:56670372-56670422	IMR90	lung:	fetal
43	chr7:56670372-56670422	AG04449	skin:	fetal
44	chr7:56670372-56670422	GM12878	blood:	n/a
45	chr7:56670372-56670422	H1-hESC	embryonic stem cell:	embryo
46	chr7:56670372-56670422	K562	blood:	n/a
47	chr7:56670372-56670422	NT2-D1	testis:	n/a
48	chr7:56670372-56670422	SK-N-MC	brain:	n/a
49	chr7:56670372-56670422	HEK293	kidney:	embryo
50	chr7:56670372-56670422	AG10803	skin:	n/a

No data

Variant related genes	Relation type
ENSG00000271047	CpG island

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033163	chr7:56307057-56677865	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv538863	chr7:56307057-56677865	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv427783	chr7:56334626-56983646	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1022563	chr7:56383876-57318888	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
5	nsv1016255	chr7:56453095-56835595	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv888066	chr7:56466740-56693762	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1028678	chr7:56511649-56795206	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv538864	chr7:56511649-56795206	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv1020833	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
10	nsv538865	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
11	nsv8090	chr7:56511877-56772523	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1017561	chr7:56512618-57334136	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
13	nsv831009	chr7:56566629-56754313	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
14	nsv1030968	chr7:56610656-56835595	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv5758	chr7:56637221-56705333	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv888067	chr7:56668557-56727887	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links